Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0167 ATGATCCGACGGCTGGCAAGAGAGGACGTGTCGGTGGATCAAAGGGCAACGCACCTAAGCGCACCAACTCTTGCTGTTAGTGCAATGCACTGGATCCATGAATGGTTATGTTATGAAGAGGAGTTGAGTGAAACCAAGAAGTGTTGTAGTCATTGCAAAACCACTAAAACCCCACTTTGGAGAGCTGGACCAGCTGGACCTAAGACATTGTGCAATGCATGTGGAATAAGGTATAGGAAGAGAAGGGATTCTATGGTGGGAATGAACAAAGGACATGAGAGGAAAAGAGAAAAATCAGAAAGAAAAATTGATATTGGTGGTGACAAAGATTTGAACAAGTCCTTGAAAGTGAAGTTAAAGGCATTAGGAAAAGAGGTTTTGTTGCATCAATCAAACTCAATTGTTAAGAAACAAAGGAAAAACAGGTTAGGAGAGGAAGAACAAGCAGCTTTTTGTTTAATGGCATTGTCTTGTGGCTTTGTTTTTGCTTAA 492 0.4106 MIRRLAREDVSVDQRATHLSAPTLAVSAMHWIHEWLCYEEELSETKKCCSHCKTTKTPLWRAGPAGPKTLCNACGIRYRKRRDSMVGMNKGHERKREKSERKIDIGGDKDLNKSLKVKLKALGKEVLLHQSNSIVKKQRKNRLGEEEQAAFCLMALSCGFVFA 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0167 163 CDD ZnF_GATA 49 96 IPR000679 GO:0006355|GO:0043565
Lal5g0167 163 Gene3D - 44 105 IPR013088 GO:0006355|GO:0008270
Lal5g0167 163 PANTHER OS01G0976800 PROTEIN 39 163 - -
Lal5g0167 163 PANTHER GATA TRANSCRIPTION FACTOR 16 39 163 - -
Lal5g0167 163 ProSitePatterns GATA-type zinc finger domain. 49 74 IPR000679 GO:0006355|GO:0043565
Lal5g0167 163 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 45 82 - -
Lal5g0167 163 SMART GATA_3 43 105 IPR000679 GO:0006355|GO:0043565
Lal5g0167 163 ProSiteProfiles GATA-type zinc finger domain profile. 43 79 IPR000679 GO:0006355|GO:0043565
Lal5g0167 163 Pfam GATA zinc finger 49 82 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0167 Lal-Chr5 1463296 1469791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0167 33 163 C2C2-Gata Transcription Factor Family AT3G06740 46.970 2.65e-33 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lal5g0167 GATA 2.1e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0167 - - lang:109330084 250.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g0965 7 15963220 15964251 Lal5g0167 5 1463296 1469791 ECH
Lal19g1123 19 14817219 14818171 Lal5g0167 5 1463296 1469791 ECH
Lal5g0167 5 1463296 1469791 Lal5g0167 5 1463296 1469791 ECH