Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0165 ATGGTAAGGGGTGGAAAAGTTAGTTGCAAAAGCAATTTCAGGTTAAGGATTCGGTCAAAAAAAGGTGGGGGTTCTGATGATTCCGATGAGGACTATGTGATTTCGGACGAAGGTGGAGATGTGTCTGATTGTCCAGAGGATTATGGTTTAGATGAATGTGCATCAGAGGAAAGTTTTGATGGTTTCATAGAGGAGGAGGAAGAAACTCGAAGAGTTAGGAAATTCAATAGATCAAAGGCCAAAAATAGCAATTGTGGTGTGAGGGGAAATGCAAGTAAAATCTCACGAAAGAGAAGTAGGATTATATATGCAGAACAACTAGAACTACAACAGAAAGAACGAGAAGGGGATGGAGATGAGGAGGAGAATGATGAGGATGAGGATTTCAATTATGATGATGATGAGGGGGAGGAGGAGGAGGAGGATGAAGATGAGGACAAGGATTTCAATTATGATGATGATGAGGAATTTACACCAGAGGAAGAATATTGCTCAGACGTGGAAGAAGAAACAAGGGGGAGAAATAAGAAAAATAATGGTGTCAAAATGGGCAAGAAGGTTTTGAAAAAAAGGGTTTCTGTGACTTCTACCAGAGACCGAAACAAGGAGGATGAATATGAGGATTTAAATTATGATGACGATGATGATGATGAAGAATTTACACTAGAGGAAGAATACTGCTCAGACGTGGAAGAAGAAACAAGGAGGAGAAAGAAGAAAAATAGTGTGAAAAGGGGCAAGAAGGTTTTACGAAGAGGGGTTTCCACATCTTCTACCAGAGGTCGAAAAAGGAGGAGATCTAGAGCTTCAAAGAACCCCTCGAGAAAGAAAAGAAGAAAGAATGGAGGGTTAAGGAGGAAAGTTAGAAGTAATGAGGTAGATGATTTTATAGATAATGGTACAGCCACTAGGAAAAAGAGTAGAAAAATACTGGTTCGGGTTAGGAGAAGAAGGGTTCTCCTTGAAGGTTCCAATTCCGATTCAGATCATGTGTCTGGATCACCTGATTATAAGTTTACTGTCTCTGAAGAAGAGAGAGAACAGGTGAGAGAAGCCAAGGAATTGTGTAGAAGTTTAAGAAGGAACTTGAGGAGTTCTTCCCTTCAAATGAAAAATGCAGAGGTTAGAGTACATGAAGATCTACAACATCAATGGAGGCCTCCAGGCTGGAAGGGCAAGGAAAAGATTGAGGAGCCTCAAGGAAGAAAGGGTAAGGAAAAGGTAGAGGATTTAAAAAGCGAGATGGGAAAGCAGGTGTGTGGAATTTGTCTGTCTGAGGAAAATACAAGAAGGGTACGGGGAGTACTAAATTGTTGCACTCACTATTTTTGCTTTGCTTGCATTATGGAGTGGGCGAAGGTGGAGTCTCGCTGCCCTCTGTGTAAGCAGAGATTTAAAACAATCACTAAACCTGCACAGTCAAAGGCAGGGCTTGATTTAAGAGAATCTGTGATACAGGTGCCCGAATGTGATCAGGTTTATCAACCCTCTGAAGAAGAACTGATGAGCTATATCGATCCATATGAGTCTGTTATTTGTTCAGAGTGCCATCAAGGCGGAGATGATGGCCTCATGTTACTCTGTGATATGTGTGATTCCCCTGCTCACACTTATTGCGTTGGTCTTGGGCGGGAAGTACCTGAAGGTAATTGGTATTGTGATGGATGCAAACCAGTTGCTGTGGGATCCTCAGGTTCTCAAGTTCAATTACCTGTGGCTTCAAGGATGACAATCCAAAGCCCACTTGTTAGACCGTCACCTGTTCATGTACCAGAAAGTATAGACTTTAACTTGATTTCTTCACCTCGTACACCGTTTAGTGAAGTATTTGGGCATCTTTCATCTTCTAGATTTTCTGGAATTATCGAAGCAGCTTCCCCAGTATCAGGAGGAGGGACTTTACCAGAGAGACACAGGATACTCTGTCAATTTCAGCAGCTGCCTTCAGTTGACAGAATGAATTCGACAACTGGCAATACTAACGGTATTTCTGTTACCACTTCAACAAGTAACTTGTGTAGCTCTCAGATTGATCAAAGTAGGGAAACAGCCATTCAACATCCAAGGACACTGGATGTGGGAACATCATGCCGCACATTCTTTGAGGAGAGACTATGCAACAATGTCTCTCCATCAATGCAGAATGGAGATCCCTTCTCCATGGGAATAAGCATTTCAAGAAGGCCGGTGTGTCAGGATTCAACAACTATGTTTACCGACAAGCCCGTGAATGAGGTGCTATGGCCTGCACATGTGGAAATGCCTGGCATATCAGATTTTGGACCAGTCTGTCAGTTCAGCAGCAGATCGAACATGGTCACAGATGGTAACTTGTCCGGGGCAATCAAAGAAGAGAGTAACTTCCCCCTTGTAAAGGAGCAGCTGCAGTCAATGGTTAAGAGCCACCTAAAGAGATTTTCTCGAGATGTTGATGTAGGCTATAGTATTTTTAAGGACATTGCAAGGAGTTCTACACACACCATATTAGCAGCTTGTGGTCTTGAGCACAAAAGGAGTGAGGTTTGCACTGTTCCCCCACCATGCATCTGTCCCCACATTGAACTAATGGGTGGTGGAGAGAAGAGTCTAATTCAAGGTTGCTGCTCATCTTGCTTTGATTCTTTTGTAGGAGATGTGGTGAAAAGGGTTTTGGAGACAAGAATGTCCTTACAGTTAAGATTTGGCCTTTAG 2691 0.4262 MVRGGKVSCKSNFRLRIRSKKGGGSDDSDEDYVISDEGGDVSDCPEDYGLDECASEESFDGFIEEEEETRRVRKFNRSKAKNSNCGVRGNASKISRKRSRIIYAEQLELQQKEREGDGDEEENDEDEDFNYDDDEGEEEEEDEDEDKDFNYDDDEEFTPEEEYCSDVEEETRGRNKKNNGVKMGKKVLKKRVSVTSTRDRNKEDEYEDLNYDDDDDDEEFTLEEEYCSDVEEETRRRKKKNSVKRGKKVLRRGVSTSSTRGRKRRRSRASKNPSRKKRRKNGGLRRKVRSNEVDDFIDNGTATRKKSRKILVRVRRRRVLLEGSNSDSDHVSGSPDYKFTVSEEEREQVREAKELCRSLRRNLRSSSLQMKNAEVRVHEDLQHQWRPPGWKGKEKIEEPQGRKGKEKVEDLKSEMGKQVCGICLSEENTRRVRGVLNCCTHYFCFACIMEWAKVESRCPLCKQRFKTITKPAQSKAGLDLRESVIQVPECDQVYQPSEEELMSYIDPYESVICSECHQGGDDGLMLLCDMCDSPAHTYCVGLGREVPEGNWYCDGCKPVAVGSSGSQVQLPVASRMTIQSPLVRPSPVHVPESIDFNLISSPRTPFSEVFGHLSSSRFSGIIEAASPVSGGGTLPERHRILCQFQQLPSVDRMNSTTGNTNGISVTTSTSNLCSSQIDQSRETAIQHPRTLDVGTSCRTFFEERLCNNVSPSMQNGDPFSMGISISRRPVCQDSTTMFTDKPVNEVLWPAHVEMPGISDFGPVCQFSSRSNMVTDGNLSGAIKEESNFPLVKEQLQSMVKSHLKRFSRDVDVGYSIFKDIARSSTHTILAACGLEHKRSEVCTVPPPCICPHIELMGGGEKSLIQGCCSSCFDSFVGDVVKRVLETRMSLQLRFGL 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0165 896 MobiDBLite consensus disorder prediction 29 63 - -
Lal5g0165 896 PANTHER F18C1.6 PROTEIN 143 885 - -
Lal5g0165 896 PANTHER F18C1.6 PROTEIN 1 143 - -
Lal5g0165 896 SUPERFAMILY RING/U-box 419 468 - -
Lal5g0165 896 Pfam PHD-finger 512 558 IPR019787 -
Lal5g0165 896 ProSiteProfiles Zinc finger PHD-type profile. 510 559 IPR019787 -
Lal5g0165 896 PANTHER F18C1.6 PROTEIN 143 885 - -
Lal5g0165 896 PANTHER F18C1.6 PROTEIN 1 143 - -
Lal5g0165 896 Pfam Ring finger domain 419 462 IPR001841 -
Lal5g0165 896 MobiDBLite consensus disorder prediction 117 166 - -
Lal5g0165 896 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 501 579 IPR013083 -
Lal5g0165 896 MobiDBLite consensus disorder prediction 98 116 - -
Lal5g0165 896 ProSiteProfiles Zinc finger RING-type profile. 420 462 IPR001841 -
Lal5g0165 896 SUPERFAMILY FYVE/PHD zinc finger 486 557 IPR011011 -
Lal5g0165 896 MobiDBLite consensus disorder prediction 239 285 - -
Lal5g0165 896 SMART ring_2 420 461 IPR001841 -
Lal5g0165 896 MobiDBLite consensus disorder prediction 323 344 - -
Lal5g0165 896 CDD RING-HC_Topors 420 462 - -
Lal5g0165 896 SMART PHD_3 512 557 IPR001965 -
Lal5g0165 896 MobiDBLite consensus disorder prediction 386 408 - -
Lal5g0165 896 ProSitePatterns Zinc finger RING-type signature. 439 448 IPR017907 -
Lal5g0165 896 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 397 485 IPR013083 -
Lal5g0165 896 Coils Coil 342 376 - -
Lal5g0165 896 MobiDBLite consensus disorder prediction 206 228 - -
Lal5g0165 896 MobiDBLite consensus disorder prediction 18 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0165 Lal-Chr5 1452648 1456787 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0165 507 556 C2H2 Transcription Factor Family AT3G01460 46.154 4.19e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal5g0165 PHD 3.6e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0165 - - mtr:MTR_7g112410 911.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0165 5 1452648 1456787 Lal5g0165 5 1452648 1456787 ECH