Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0160 ATGGCTATTTCTAATCTACCCATAAGCTTATTAGGGTTCTATTTTGTAGCCATTCTCTCAATCGTAGCCTCTATTGCATCCTCCATTGATCCCATTTGCAATCTCACACCTTATCCAACATTTTGTGAATCCAATTTACCTCCTAATGACAAAGGTGACATACATGAATATGGCAAATTTTTCATAGGCAAATCATATTCATCATCAAGAAAATTCTTCTCATTAGTCTCAAAGTACCTTAAATCTCCCTCAAATTTCTCTAACCCCACAATCCTTGCCCTTCAAGATTGTCACCTTTTAGGTGATCTAAGCAATGGTTTTTGGTCTAGGGCTCTAAAAAAAGTCAATTCCACTAACAACCCTAGTACCTTAGAGGTTGAAAATTTACATACCTTAATTAGTGCCACTTTAACCAACCTTGAAACATGCTTAGAAGGCCTTAAACAAACCACACCAAATATTGATGATGAACTACTTACCCATCTTTCAAATGGGACAAAACTATATAGTGTATCTCTTGCCATCTTCAAAAGTGGATGGAAAAACAACACAAACAATAACCCTAGAAAACTGAGAGAGAAAAATCATTATCACATGTGGGAACAAAGGTTGTATGAGCTTATTAGTAAAAGAGGAAGAAAGTTGCTTCAATTAACTCCTGATGGTGTTAATGTGAGTCAAGTAGTGGTGGTGAACCAAGATGGTTCTGGAGACTTCATAACTATAAATGATGCTGTGGCTGCAGCACCAAACAATAGTGTAAGTAGTGATGGTTTTTCGGTGATTCATGTAGTGGCTGGAGTATATGAAGAGATTGTTTCTATACCAAAAAATAAGAAGTATTTGATGATGATTGGAGATGGTATTAATCAGACCATAATCACTGGAAATCAAAGTGTGGTTGGTGGCTCAACTACCTTCAATTCTGCTACCTTTGGACTCAACTTTTCGGTTGTCATGGGCCAAAAAATGTCATTTAGTTATGAGTCAAAGTTTACGTCTACTGTGGTTGCCCAAGGTTTTGTGGCAGTGAACATAACATTTCGGAACACAGCAGGAGCAATCAACCACCAAGCAGTAGCACTTAGAAGTGGTGCAGACCTATCTGCATTCTATAGTTGCAGTTTTGAAGGGTACCAAGACACTTTATACACTCATTCTCTTAGGCAATTTTACAGAAATTGTGACATTTATGGCACAATCGACTTCATATTTGGTAATGCCGCGGTTGTTTTGCAACAATGTAACATTTTTCTTAGACTCCCCCTACCTGGTCAATTCAATGCAATCACGGCGCAAGGCCGAACCGATATCAACCAAAATACTGGGACCTCGATTCACAATTGTAGCATCACGGCCTCGAGCGACTTAGCCACTAGTAATGGCACCACAAAAAGTTATTTGGGTAGACCATGGAAGCAATATTCGCGCACAATTTTTATGCAATCTTTTATCGATAGTTTGATCAATCCTTTGGGGTGGAGTGAATGGTCAGGAAATTTTGCTTTGGATACCCTTTATTATGCAGAGTTCGATAATCAAGGGCCGGGGGCCGATACTAGTAATCGGGTTACTTGGCTTGGGTATCATGTGATCAATGATACAGATGCAATTGATTTCACAGTTTCTAATTTCATTTTTGGTGATGCTTGGATACCTATAACTGGAGTGCCTTACTATAGTGGTTTACTTTGA 1695 0.3864 MAISNLPISLLGFYFVAILSIVASIASSIDPICNLTPYPTFCESNLPPNDKGDIHEYGKFFIGKSYSSSRKFFSLVSKYLKSPSNFSNPTILALQDCHLLGDLSNGFWSRALKKVNSTNNPSTLEVENLHTLISATLTNLETCLEGLKQTTPNIDDELLTHLSNGTKLYSVSLAIFKSGWKNNTNNNPRKLREKNHYHMWEQRLYELISKRGRKLLQLTPDGVNVSQVVVVNQDGSGDFITINDAVAAAPNNSVSSDGFSVIHVVAGVYEEIVSIPKNKKYLMMIGDGINQTIITGNQSVVGGSTTFNSATFGLNFSVVMGQKMSFSYESKFTSTVVAQGFVAVNITFRNTAGAINHQAVALRSGADLSAFYSCSFEGYQDTLYTHSLRQFYRNCDIYGTIDFIFGNAAVVLQQCNIFLRLPLPGQFNAITAQGRTDINQNTGTSIHNCSITASSDLATSNGTTKSYLGRPWKQYSRTIFMQSFIDSLINPLGWSEWSGNFALDTLYYAEFDNQGPGADTSNRVTWLGYHVINDTDAIDFTVSNFIFGDAWIPITGVPYYSGLL 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0160 564 PANTHER PECTINESTERASE 328 562 - -
Lal5g0160 564 PANTHER PECTINESTERASE 18 315 - -
Lal5g0160 564 Pfam Plant invertase/pectin methylesterase inhibitor 28 175 IPR006501 GO:0004857
Lal5g0160 564 SMART PMEI_2 24 175 IPR006501 GO:0004857
Lal5g0160 564 SUPERFAMILY Pectin lyase-like 226 562 IPR011050 -
Lal5g0160 564 Pfam Pectinesterase 333 549 IPR000070 GO:0030599|GO:0042545
Lal5g0160 564 Pfam Pectinesterase 229 327 IPR000070 GO:0030599|GO:0042545
Lal5g0160 564 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 178 IPR035513 -
Lal5g0160 564 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 177 IPR006501 GO:0004857
Lal5g0160 564 CDD PMEI-like_3 32 181 - -
Lal5g0160 564 PANTHER PECTINESTERASE 328 562 - -
Lal5g0160 564 PANTHER PECTINESTERASE 18 315 - -
Lal5g0160 564 Gene3D - 222 563 IPR012334 -
Lal5g0160 564 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 178 IPR035513 -
Lal5g0160 564 ProSitePatterns Pectinesterase signature 2. 397 406 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0160 Lal-Chr5 1380858 1383946 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0160 15 564 Carbohydrate Esterase AT4G02330 50.519 0.0 556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0160 K01051 - gmx:100801141 807.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0160 5 1380858 1383946 Lal24g0502 24 3547002 3549436 PCT