Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0145 ATGTTTGGTTCTGTAGCAGATACTGGATATGAATATGATGTAAGTGGACTTTCAGGACTGATTTTGATTCCGAAGCGATTTGTATGGCCTTATGGAGGAAGAAGGGTGTTTCTAACTGGTTCTTTTACAAGATGGTCTGAACATATACCTATGTCTCCCATGGAGGGATGCCCTTCAGTATTTCAAGTTGTTTGCAGCTTAACACCGGGATATCATCAGTTCAAATTCAATGTAGACGGTGAGTGGCGGCATGATGAGCATGAGCCATGTGTAAGTGGGAACTTTGGAGTAGTTAATACTATTTATTTAGTGAGAGAGCCAGATATTACACCTGCAACCGTACGTGCTGAAACACCCGGTAGATACCACATGGAGGTTGATAATGATGTCTTTGGGCATGTGGAAGCTAATCCAAGAACTCAAGAATCTGATCTGGAGGCCTCTCGCCTCCGTATATCTACATTCCTGTCTACTCATACTGCTTTTGAGTTGCTCCCCGAGTCAGGGAAGGTCAATGCCTTGGACATAAGTTTACCAGTTAAGCAAGCATTCCATATTCTTTATGAACAGGGCATCTCGATGGCTCCTCTATGGGATTTTGCCAGTAGCCAGTTTGTTGGAGTGCTTAGTGCAATGGATTTCATTCTAATATTGAGAGAGTTGGGGAATCATGGCCCAAATTTGACTGAAGAACAACTCGAGACCCATACTATAGCTGCCTGGAAAGAGGGAAAATTTCAGCTACGTGGAGCACTTGAAAGTAATGGGGGATCACATCCTTGGCGTTTTGTTCATGCTGAGCCCAATGAATGTCTAAAAGATGTAGCTTTGAAAGCTTTGCAAAACAAGGTATCAACAGTTCCTATCATCCATTATGCTTCAGAGGATGGTTCATTTCCTCATTTGCTACATCTTGCTTCCTTATCAGGGATACTAAAATGTATATGCAGGCATTTTAAATATTCCCCTGGTTCTTTGCCGATTCTTCAAGTACCGATTGGTTCAATACCCTTGGGAACATGGGTGCCTAAAGTTGGAGAACCAAATGGACAGCCACTAGCAATGCTAAGGCCAAATGCATCTCTTGGTGCTGCTTTATCAATGTTTGTTGAAGCTAAAGTTAGCTCAATACCAATTGTGGATGATAATGATTCATTGCTTGACATATATTCAAGAAGTGATATTACTGCATTGGCTAAAGATAACACTTATGCCCGAATATCTCTCGACGACATTACTATCCATCAGGCGTTGCTTTTGGGACGAGATGCAAATTACCGTTATGGGCTTTACAACCACCGAAGATGTCACATGTGTTTGAGGTCTGATTCATTGCACAAAGTGATGGAGTGGTTGGCAAAACCTGAAGTTAGGAGACTTGTGATTGTGGAGGCCGGAAGCAAGCGCGTCGAAGGGATTATTTCCTTAAGTGATGTCTTCAGATTCTTGTTTGGAATTGGCTAA 1464 0.4228 MFGSVADTGYEYDVSGLSGLILIPKRFVWPYGGRRVFLTGSFTRWSEHIPMSPMEGCPSVFQVVCSLTPGYHQFKFNVDGEWRHDEHEPCVSGNFGVVNTIYLVREPDITPATVRAETPGRYHMEVDNDVFGHVEANPRTQESDLEASRLRISTFLSTHTAFELLPESGKVNALDISLPVKQAFHILYEQGISMAPLWDFASSQFVGVLSAMDFILILRELGNHGPNLTEEQLETHTIAAWKEGKFQLRGALESNGGSHPWRFVHAEPNECLKDVALKALQNKVSTVPIIHYASEDGSFPHLLHLASLSGILKCICRHFKYSPGSLPILQVPIGSIPLGTWVPKVGEPNGQPLAMLRPNASLGAALSMFVEAKVSSIPIVDDNDSLLDIYSRSDITALAKDNTYARISLDDITIHQALLLGRDANYRYGLYNHRRCHMCLRSDSLHKVMEWLAKPEVRRLVIVEAGSKRVEGIISLSDVFRFLFGIG 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0145 487 CDD E_set_AMPKbeta_like_N 26 104 - -
Lal5g0145 487 Gene3D Immunoglobulins 21 105 IPR013783 -
Lal5g0145 487 ProSiteProfiles CBS domain profile. 348 406 IPR000644 -
Lal5g0145 487 Pfam Glycogen recognition site of AMP-activated protein kinase 23 109 IPR032640 -
Lal5g0145 487 SUPERFAMILY CBS-domain pair 351 484 IPR046342 -
Lal5g0145 487 Gene3D - 331 486 IPR046342 -
Lal5g0145 487 SUPERFAMILY CBS-domain pair 152 319 IPR046342 -
Lal5g0145 487 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 14 485 - -
Lal5g0145 487 Gene3D - 141 322 IPR046342 -
Lal5g0145 487 SMART cbs_1 352 400 IPR000644 -
Lal5g0145 487 SMART cbs_1 170 219 IPR000644 -
Lal5g0145 487 SMART cbs_1 435 484 IPR000644 -
Lal5g0145 487 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 14 485 - -
Lal5g0145 487 SUPERFAMILY E set domains 23 105 IPR014756 -
Lal5g0145 487 Pfam CBS domain 352 396 IPR000644 -
Lal5g0145 487 Pfam CBS domain 433 484 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0145 Lal-Chr5 1278447 1285102 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0145 - - gmx:100778117 762.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0145 5 1278447 1285102 Lal3g1464 3 20541213 20550934 LSH