Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0144 ATGTCAGATTCAGAGTTGAATCCAGAAATTTTCAGTGTTCGAATTGTATCCATTGATTATTACATGGCACCGCCAATTTCAGAATTCGATATCTCTTATAGCACTTTCCATCGTGGAAAAGTGAAAGAGGTTCCTGTAATAAGAGTTTATGGTTCTACTCCTTCTGGCCAGAAAACTTGTTTGCATATACATAAAGCTTTACCCTATATGTATGTGCCGTGTTCAGATATAACACTTCAACTTGACCAAGAAGGTGATGCATACACATATAAAGTAGCAGCTTCTCTCGAGAAAGCTTTGAAGCTTAAAGGAGGTGCTGGTTTCACAAGACAACATGTACATGGTTGTAGCCTTGTGCGAGCAAGGAAATTTTATGGTTATCATTCATTCGAGGAGTTATTTGTAAAGATATACCTATATTATCCACAAGACGTCGCCCGTGCAGCTAATCTTCTCTTGGCGGGTGATGTTCTTGATAAAACTTTACAGCCTCATGAATCACATATTCCCTTTATTCTTCAGTTTCTGGTTGACTACAACTTGTATGGCATGGGTTATTTGCACCTATCTAAGATGAAGTTCCGCCTTCCCATACTAGACTCTTCTCAAAAGAAATTAAATATCAATAGCCATCATAGAAGGGCAGATCCAGGGGCTGATATATGGTTAGATGCAAAAGTGTGGATAACTTCCATGATCCCACCTGATTGGACGTGGCCACCCACTAGTGATTTTGGTGCTTCATCAAATGATAAGGCTCACTGCCCTAGACGTCAAAGCATCTGTGAGCTTGAGGGGGATGCTTCTGTAGATGAGATTCTTAATCAGAATTTTAAAATATATTCATCTCTCTCACAGACATGCTCGGATGTCAAAATGGTTCAGTCACTTGTACCAATATGGGAGGAACAGCAGAAAAGGTCTGGGATCCATGAGGCTACTATGCCTCCTGATCCTGGAAAACCACTCCCAGAAGATGTTATGAAACTTCTTCATGGTAGTCTTGACTTTGAGCAAAAATTTCTTGAATTGTGCAGTGAAGCTGAAACCTCTTTATCTTTGACTCCTTCTCAAAAGGATTTGAGAGAAACAGACATAATAGGCTTGGCATCACCACCATGTTCATTATCTGTAGATGCCAACTTCCATGAGGAAGAGACTGACACCAGTCTCAAATTATTGACTGTTAATGAAATGCAATCATCTGAAATGATTGGAATGTTGGACACCAAGGCTGCAGATAAGGAAGCACAAAATCTTCTCAAGTGGCTTGCAACTTCCCAAGCTGTGGAGGATATAAACTCTGATGATGAGCTTGCTTGTGAAACAATCTTGAGTCCCTTCTTACCTGCTTCAACAATTGATAAGGTGCTGGAGAAAGCGAATATGGCTTATGAAAGCGAGTCCCAGAAGGAGTGTCAGGATATTCTAGATTCAATTGATGATTGGCAAAAACCTTCTTGTCCATCTGATCTCACTCATCCTATTGAGGCTCCATCAATCAGTATGATACCCCATGTTGGTTCTGCTGATGAGCTCTCAAGTCCATGTGCTAGTTTGGCTGGAACCTCTACTGCACTAGAGATAAATACTAAATCCAAAATGGCATCTGAGTTCCATGTAATGTACAGTATTGACACAAGCACAGCTGGTAAAGTTAAAAGGACTAAACAATGGGGGTCATTGCCTTTTTTCACACCCGATAAGGTTAGTAACGATGAAGAACTTGCTGATTTGCATGTGACTCATCTATTTGAAAGTGAATCTGGAGATTCTGCTGACTCAGATTACTCGATGAGAAGTGATGTTAGAAATAGTGCTTGTATTAGAAGATATGCGGGCAAGAGTGCTTCAGAATTAAAAGAAGGAAACAAATTGGTTAACTGCTCTTTGCGTGACTTGATGAGGCGAAAGAGATCCCATCGAGTTGAGCAAGCTGAATGCGAGTCTGGAAGGACTAAAAAGATTCTTGTAGACAGGCATGAGGAACCAAACACATGCCTTTGGAAAAAACAACTGGATTTCAAGACAATTCAAACTGATGAAGATGAAACAGAACTCCAGAATAATTTTGATCATAAACCTAGCAATCATGATAATTTAGTGTGTGAGAAACCACATCCATCTGGCAGTGATAGTTTCTTACGGGCTACTGAGGCTAGTAATCCGAAAGATGATTGTCTTGGTCAACATGAAATGGACAGTGTAGAAACAAGTTTAGTATTTGGGGACCCCTTGAATAGAAGTTCTTTATTTTGCCAAGGACCATGCAATCCTGAAAATACACATTTGACTGATTCCATAGACCACTTAGAGGGTTGCAGGGGTAAAAACCTTAAGGATGATACAGCATATGCAAAAGCTGTAGCTTCTGATTCCTGTATTCCAAAATCCTTTTCAGATGTTCTGTTGAGAGCTGATGCGGATAATGGAACCAGTGGTCCTGAGGCATGCCATAAAATTGACTGCGCAGCTTCCACATGTGTACACTTCTCTTGCATTGATGATAAAGTCTCTGGCGAACATAATGGCATAGACAAAAATTCTAATCGAAGCATACCTTTCTTGGAACATGATCAGACAAAATATTTTCAGAATGCTATGGGCAAAAGTGCTGCAAGTGACATGCAAGTACTACTTATTGAAAATAAAAAACATGATGAATATTTGATGCATGAGACTATTGGCCCAGAACCCATTGTTGATGACCTGAAGGGTAATGACGTGGTGAAATTAACTGGCATAACCATAGGCAAGAAAACCCCTCTGGCTGATAAAAAACTTGAAAGTTTCAAGTCCTTGCCAACCATCTCTAATACCCATTTTCCTTTGGATGAGGAAGCTTATGATGAAATGCCAGGGAATGCTCTAGATGTTTTTCTCCCCTTTTCTGCAAACGAGTCCCAGAAGGAGATGAAAACATGGAACAAGTTTGTTGCAATTGCAGCCCCTAGGTCTCATGGAAATGAGGGTGTTTCCACTCACTATCAAAATGATGGCTCTCCCCTGTACCTATTAACACCTAATATTTTGCCTCCTTCCGCACTTAGTGTGCATAGATGGCTAGATGAGAGAGATCAAAAGCTTCAAGAAACTGATGGGGAGGACAAGTATGTACCTGAATGTGCTTCTGGGCCTCCTCTTAGGCCTAAGCTGTATCAAGATGCTGGTGCAGAAAAGAAATCTCCACACAGTAGTGGGGGACAAGATATTTCTCAGATATCAGGCCCTGATAGGAAATCAAGTTTTACCCCTCTAAGTCAAATTGGATTTCGAGACCCTGCCAGTGCTGGATGTGGACAACAATTGACATTACTTAGTATAGAGGTTCTTGCAGAATCAAGAGGAGAATTTTTACCTGATCCTCAGTTTGATGGCATCAACATTGTAGCTCTAGGTTTTCAGAATGATAATGATCCTACTGTTGAAGTTCTTGTCCTTTTGCGTAGTAAATTTGAACCTTGTCATAGAAGTTTTGATGGCTTATCAGGCTGTAAAGTATTGGTCTTCACTGATGAAAAGCTCTTGTTAAAAGAATTTATCAAGTTCGTCTCTTCATCTGACCCAGATATTTTGATGGGTTGGGATATTCAAGGAGGTTCTCTTGGTTTTCTAGCAGAAAGGGCTTCACATCTTGGTTTAGGATTACTTAATAGTTTGTCTCGCATTCCATGTGAGTCCTGGGTTGCTTCTGAAGATACCAAAACTTCTGGAAAAGCTGTCTTGGAACTGGACATTCCTGATAGCCCTACTTTAGATTCTTGTGTACAAGAAAATTCAATAATTGAAGATGAATGGGGACGAACGCATGCAAGTGGAATTCATGTAGGTGGCAGAATTGTCCTTAATGTATGGAGATTGATCCGTGGAGAAGTTAAGCTGAATTTATACTCAGTTGAAGCTGTAGCTGAAGCTGTACTGAGGCGGAAAATCCCTTTAATTCATCACAAGGTGCTGACAAAATGGTTTTCGAGTGGTCCTGGACAAGCCAGATACCAGTGTATCAAATATGTTACAGAGAGATCCAAGCTGAACCTTGAGATATTAAACCAACTTGATATGGTTAATCGGACATCAGAACTTGCTCGTGTCTTTGGCATAGACTTCTTTTCTGTTCTCTCTCGAGGCTCACAATACCGTGTTGAATCCATGTTTTTGAGGTTGGCTCATACACAGAATTATCTTGCTATCTCACCTGGAAAGCAACAGGTTGCTTCTCAACCTGCCATGGAGTGCCTGCCTCTAGTAATGGAACCAAAATCAGGATTTTATTCAGATCCTGTGGTTGTATTGGACTTCCAGTCTCTTTATCCATCCATGATAATTGCATACAACCTTTGCTTTTGTACATGTCTTGGTAAAGTTGTGGCATCAAAGGCTAACACGCTTGGAGTTAGTTCATTTTCACCAGAGCAACATGTTCTGCAGAATTTGAAAGATCAAATCTTGCTCACTCCAAATGGTGTTATGTTTGTACCATCCAAGATTCGCAGAGGTGTTTTGCCCCGCTTATTGGAAGAAATCTTGTCAACTAGAATAATGGTGAAACAGGCAATAAAAATGTTGGCTCCTTCGGAGCAAGTTCTTCAGCGGATATTTAATGCGAGACAACTTGCTTTGAAGCTTATATCAAATGTAACTTATGGTTACACTGCTGCTGGATTTAGTGGTCGTATGCCTTGTGCAGAACTTGCTGACAGTATTGTTCAATGTGGCCGTAGTACACTGGAAAAGGCTATATCATTTGTAAATCTGCACGAAAAGTGGAATGCTAAAGTTATTTATGGAGACACTGATAGTATGTTTGTCCTCCTTAAAGGACGTACTGTCAAAGAATCCTTCCAAATTGGAAATGAGATTGCTTCTGCTATCACTGCTATGAACCCCAGTCCTGTCACCCTGAAGATGGAGAAAGTTTATCACCCTTGTTTCCTCCTTACTAAGAAGCGATATGTCGGCTACAGTTATGAAAGCCCGGATCAAAATGAACCTACTTTTGATGCTAAAGGTATTGAGACAGTTCGCAGGGACACATGTGATGCAGTTGCAAAGATAATGGAGAAGTCTTTGAGACGCTTTTTTGAGCATCAGGATTTATTTGAGGTGAAGACTTACTTGCAACGTCAGTGGAAGAGGATTCTTTCTGGCAGATTCTCCCTTAAAGATTTTGTCTTTGCTAAGGAGGTTCGATTGGGTACATACAGTGCTAGGATCTCATCACTTCCTCCTGCTGCAATTGTGGCCACTAAGGCAATGAGAGCTGATCCTAGGGCAGAACCATGTTATGCTGAGAGAATACCTTATGTTGTAGTACATGGAGAGCCCGGTGCCCGACTTTCTGATATGGTTGTCGATCCATTGGAAGTTTTGGCAATCGATTCCCCATATAGAATAAATGATTTATATTACATTAATAAACAAATAATACCGGCTCTACAACGGGTTTTTGGGCTGCTAGGTGCTGACCTGAACTACTGGTTTTCAGAGATGCCCCGCCCTATTAGGGAAGCTTCTGTAAAGCATAATTTCACTTCAAATTCTCATCGAACCCGAATTGATTATTACTATCTCTCAAAACATTGTGTCCTTTGTGGCGGGTTGGTCCAGGCATCGGCACATTTATGCAATCAATGTTCTGAAAATGGAGTAGCTGCTGTGACAGCACTGATTAGTAAAACTTCAAAGTTGGAGCAGGAGATGCAACATCTTGTTGCTATATGTCAGCACTGTGGAGGCGGGGACAGGCTTCTGGAAAATAGCGTGAAGTGCACGTCGATTTCATGCTCGGTGTTCTACGAGAGGCGGAAAATTCAGAAAGAACTACTGGCTGCCACCCATGTTGCTGCAGATAAAGGCTTCTATCCAAGATGCATGATAGAATGGTTCTGA 5889 0.4096 MSDSELNPEIFSVRIVSIDYYMAPPISEFDISYSTFHRGKVKEVPVIRVYGSTPSGQKTCLHIHKALPYMYVPCSDITLQLDQEGDAYTYKVAASLEKALKLKGGAGFTRQHVHGCSLVRARKFYGYHSFEELFVKIYLYYPQDVARAANLLLAGDVLDKTLQPHESHIPFILQFLVDYNLYGMGYLHLSKMKFRLPILDSSQKKLNINSHHRRADPGADIWLDAKVWITSMIPPDWTWPPTSDFGASSNDKAHCPRRQSICELEGDASVDEILNQNFKIYSSLSQTCSDVKMVQSLVPIWEEQQKRSGIHEATMPPDPGKPLPEDVMKLLHGSLDFEQKFLELCSEAETSLSLTPSQKDLRETDIIGLASPPCSLSVDANFHEEETDTSLKLLTVNEMQSSEMIGMLDTKAADKEAQNLLKWLATSQAVEDINSDDELACETILSPFLPASTIDKVLEKANMAYESESQKECQDILDSIDDWQKPSCPSDLTHPIEAPSISMIPHVGSADELSSPCASLAGTSTALEINTKSKMASEFHVMYSIDTSTAGKVKRTKQWGSLPFFTPDKVSNDEELADLHVTHLFESESGDSADSDYSMRSDVRNSACIRRYAGKSASELKEGNKLVNCSLRDLMRRKRSHRVEQAECESGRTKKILVDRHEEPNTCLWKKQLDFKTIQTDEDETELQNNFDHKPSNHDNLVCEKPHPSGSDSFLRATEASNPKDDCLGQHEMDSVETSLVFGDPLNRSSLFCQGPCNPENTHLTDSIDHLEGCRGKNLKDDTAYAKAVASDSCIPKSFSDVLLRADADNGTSGPEACHKIDCAASTCVHFSCIDDKVSGEHNGIDKNSNRSIPFLEHDQTKYFQNAMGKSAASDMQVLLIENKKHDEYLMHETIGPEPIVDDLKGNDVVKLTGITIGKKTPLADKKLESFKSLPTISNTHFPLDEEAYDEMPGNALDVFLPFSANESQKEMKTWNKFVAIAAPRSHGNEGVSTHYQNDGSPLYLLTPNILPPSALSVHRWLDERDQKLQETDGEDKYVPECASGPPLRPKLYQDAGAEKKSPHSSGGQDISQISGPDRKSSFTPLSQIGFRDPASAGCGQQLTLLSIEVLAESRGEFLPDPQFDGINIVALGFQNDNDPTVEVLVLLRSKFEPCHRSFDGLSGCKVLVFTDEKLLLKEFIKFVSSSDPDILMGWDIQGGSLGFLAERASHLGLGLLNSLSRIPCESWVASEDTKTSGKAVLELDIPDSPTLDSCVQENSIIEDEWGRTHASGIHVGGRIVLNVWRLIRGEVKLNLYSVEAVAEAVLRRKIPLIHHKVLTKWFSSGPGQARYQCIKYVTERSKLNLEILNQLDMVNRTSELARVFGIDFFSVLSRGSQYRVESMFLRLAHTQNYLAISPGKQQVASQPAMECLPLVMEPKSGFYSDPVVVLDFQSLYPSMIIAYNLCFCTCLGKVVASKANTLGVSSFSPEQHVLQNLKDQILLTPNGVMFVPSKIRRGVLPRLLEEILSTRIMVKQAIKMLAPSEQVLQRIFNARQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNLHEKWNAKVIYGDTDSMFVLLKGRTVKESFQIGNEIASAITAMNPSPVTLKMEKVYHPCFLLTKKRYVGYSYESPDQNEPTFDAKGIETVRRDTCDAVAKIMEKSLRRFFEHQDLFEVKTYLQRQWKRILSGRFSLKDFVFAKEVRLGTYSARISSLPPAAIVATKAMRADPRAEPCYAERIPYVVVHGEPGARLSDMVVDPLEVLAIDSPYRINDLYYINKQIIPALQRVFGLLGADLNYWFSEMPRPIREASVKHNFTSNSHRTRIDYYYLSKHCVLCGGLVQASAHLCNQCSENGVAAVTALISKTSKLEQEMQHLVAICQHCGGGDRLLENSVKCTSISCSVFYERRKIQKELLAATHVAADKGFYPRCMIEWF 1962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0144 1962 MobiDBLite consensus disorder prediction 1029 1087 - -
Lal5g0144 1962 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 7 1955 IPR030559 GO:0006281|GO:0016035|GO:0019985
Lal5g0144 1962 PRINTS DNA-directed DNA-polymerase family B signature 1428 1441 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lal5g0144 1962 PRINTS DNA-directed DNA-polymerase family B signature 1537 1549 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lal5g0144 1962 PRINTS DNA-directed DNA-polymerase family B signature 1593 1601 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lal5g0144 1962 CDD POLBc_zeta 1376 1824 - -
Lal5g0144 1962 SUPERFAMILY Ribonuclease H-like 27 1374 IPR012337 -
Lal5g0144 1962 Gene3D Helix hairpin bin 1494 1554 - -
Lal5g0144 1962 MobiDBLite consensus disorder prediction 1065 1087 - -
Lal5g0144 1962 Gene3D Palm domain of DNA polymerase 1414 1659 IPR023211 -
Lal5g0144 1962 Pfam DNA polymerase family B 1369 1816 IPR006134 GO:0000166|GO:0003677
Lal5g0144 1962 Gene3D - 1134 1411 IPR036397 GO:0003676
Lal5g0144 1962 SMART polmehr3 1101 1607 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lal5g0144 1962 Pfam C4-type zinc-finger of DNA polymerase delta 1861 1934 IPR025687 -
Lal5g0144 1962 ProSitePatterns DNA polymerase family B signature. 1595 1603 IPR017964 GO:0000166|GO:0003676
Lal5g0144 1962 CDD DNA_polB_zeta_exo 1100 1350 - -
Lal5g0144 1962 Pfam DNA polymerase family B, exonuclease domain 1101 1231 IPR006133 -
Lal5g0144 1962 Pfam DNA polymerase family B, exonuclease domain 54 196 IPR006133 -
Lal5g0144 1962 Gene3D - 1670 1833 IPR042087 -
Lal5g0144 1962 Gene3D DNA Polymerase, chain B, domain 1 29 195 - -
Lal5g0144 1962 SUPERFAMILY DNA/RNA polymerases 1415 1829 IPR043502 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0144 Lal-Chr5 1262244 1276135 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0144 39 195 Core DNA Replication Machinery Family AT5G63960 25.926 2.64e-09 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0144 K02350 - gmx:100777934 2857.01