Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0142 ATGCAAGATATTTTCGGATCAGTTCGGCGATCACTCGTGTTCCGTGGTTCGCCGGAGAACGAAGAACCTTCGTCTTCTCTCAGAGGAACCATTGTTGACAAGATCAGTTGTTGCATCCGAAATTCCAGAGTCTTCTCCAAACCACCGTCATGTCCGCCGTTTCCTCCGCCTCCTCCTACGATACGATGGCGGAAGGGTGAGTTGATTGGATGCGGTGCCTTTGGTCATGTTTACGTTGGCATGAATCTCGATTCTGGAGAGCTTCTAGCAGTTAAACAGGTTTTGATTGCGGCAAGTAGCGCTTCGAAGGAGAAGGCACAGGCTCACATAAAAGAGCTCGAGGAAGAAGTTAAGCTTCTTAAAGATCTTTCACATCCCAACATTGTTAGATATTTGGGTACAGTTAGAGAGGAGGACACTTTAAATATTCTGTTGGAGTTTGTTCCTGGTGGATCCATATCATCACTATTGGGGAAGTTTGGATCTTTCCCTGAGGCTGTCATAAGAACTTACACAAAGCAAATACTGGTTGGACTTGAGTACTTGCACAAAAATGGAATCATGCACAGAGACATCAAGGGAGCCAATATCCTCGTAGATAATAAAGGGTGCATAAAACTTGCAGATTTTGGGGCATCCAAGCAAGTCGTTGAGCTGGCTACTATTTCTGGTGCCAAATCTATGAAAGGTACTCCATACTGGATGGCTCCTGAAGTTATTCTTCAGACTGGGCATAGCTTCTCTGCTGACATATGGAGTGTGGGTTGTACTGTGATTGAGATGGCCACGGGAAAGCCTCCATGGAGCCAGCAATACCAACAAGAGGTTGCTGCTCTCTTCCATATAGGGACGACCAAGGCTCATCCGCCAATCCCTGATCATCTATCTGTTGGAGCAAAAGATTTCCTGATAAAATGTTTGGAGAAGGAACCAAATTTGAGACCATCAGCGTCAGAATTGCTGCAGCATCCCTTTGTTACTGGTGAATCTGTGGATATTCTTCCTCTGTCACCCACTGCGTTGGAAAATGTTGAAGCTCCATCATCATGTGCCCCAAATGTTGAATCCTTCCTTTGCTCAACTGAAGATTCTCAGGACCTGGGAAATCAACAGTTGTGGGGAATGAGCAATGATGATGACATGTGTGTGATTGATGACAAGGATGAGTTTTTGCAATGTAGTGTCAAACAAAAATCATCAATGCCAGAAAATATTGAGAGTTTCAACCCAATGTCTGATCCTTCTGATGACTGGGGGTGTAAATTTGATGCAAGTCCAGAACTGGACCATAAAGAAGTTCGTTCGGACATTGATGAGAGTTACATGCCACCCGGTCACTCGGGGGATAAGGGGCATAAAGATTTTTCCTTTCCTAGTGTGCCATCTCTGACAGAGGACGATGAGGAGGTCACAGAGTTAAAAATTCAAGACTTTTTAGCTGAGAAAGCTCTTGAACTAAAAAAACTTCAGACACCTTTATATGAAGAGTTCTATAACACTTTAAATACATCTTGCTCTCCCAACGTGATCAGTAGCCCAAGTGATGAAACTGGTTCTCGGAAATACTTGAAATTACCCCCTAAAAGCAGGTCACCAAGTCGGGTACCAAGTAGCACTTCATCTAAAGCAGTTGACAATGTTGGAAGTCCTGGAAGTAATGACAGGTCCTCATCAATTTTAAGCAATCTAAATGATCATGTTTCAAAGGATATTCCAGCATCTCCCCTTACTGAAAGGAGAAGACCGGTAGTTGACTCCCAGCAAGATCCAAATAGCCCGAGTCTAAGCAATTCTGAGAGATTGAGGAAGTGGAAAGAAGAGCTCGACCGGGAGCTTGAGAGAGAGCGAGAAATGATGCGCCAAACTGGTATGGGAACTTCACATAGGCAAAGAGAGCGGTCAAGATTTGCTTCGCCCAGCTAA 1923 0.4441 MQDIFGSVRRSLVFRGSPENEEPSSSLRGTIVDKISCCIRNSRVFSKPPSCPPFPPPPPTIRWRKGELIGCGAFGHVYVGMNLDSGELLAVKQVLIAASSASKEKAQAHIKELEEEVKLLKDLSHPNIVRYLGTVREEDTLNILLEFVPGGSISSLLGKFGSFPEAVIRTYTKQILVGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQQEVAALFHIGTTKAHPPIPDHLSVGAKDFLIKCLEKEPNLRPSASELLQHPFVTGESVDILPLSPTALENVEAPSSCAPNVESFLCSTEDSQDLGNQQLWGMSNDDDMCVIDDKDEFLQCSVKQKSSMPENIESFNPMSDPSDDWGCKFDASPELDHKEVRSDIDESYMPPGHSGDKGHKDFSFPSVPSLTEDDEEVTELKIQDFLAEKALELKKLQTPLYEEFYNTLNTSCSPNVISSPSDETGSRKYLKLPPKSRSPSRVPSSTSSKAVDNVGSPGSNDRSSSILSNLNDHVSKDIPASPLTERRRPVVDSQQDPNSPSLSNSERLRKWKEELDRELEREREMMRQTGMGTSHRQRERSRFASPS 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0142 640 MobiDBLite consensus disorder prediction 503 640 - -
Lal5g0142 640 ProSiteProfiles Protein kinase domain profile. 63 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g0142 640 Coils Coil 601 621 - -
Lal5g0142 640 MobiDBLite consensus disorder prediction 531 568 - -
Lal5g0142 640 CDD STKc_MAPKKK 62 326 - -
Lal5g0142 640 ProSitePatterns Protein kinases ATP-binding region signature. 69 92 IPR017441 GO:0005524
Lal5g0142 640 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1 1 609 - -
Lal5g0142 640 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 609 - -
Lal5g0142 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Lal5g0142 640 SMART serkin_6 63 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g0142 640 MobiDBLite consensus disorder prediction 503 518 - -
Lal5g0142 640 Pfam Protein kinase domain 64 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g0142 640 MobiDBLite consensus disorder prediction 599 640 - -
Lal5g0142 640 Gene3D Transferase(Phosphotransferase) domain 1 62 350 - -
Lal5g0142 640 Coils Coil 96 123 - -
Lal5g0142 640 SUPERFAMILY Protein kinase-like (PK-like) 62 327 IPR011009 -
Lal5g0142 640 MobiDBLite consensus disorder prediction 443 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0142 Lal-Chr5 1251830 1256799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0142 1 639 MAP Kinase Kinase Kinase AT1G54960 54.559 0.0 654
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lal5g0142 Pkinase 2.9e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0142 K20606 - gmx:100807537 918.302
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0142 5 1251830 1256799 Lal18g0355 18 3009891 3015112 ECH
Lal5g0142 5 1251830 1256799 Lal5g0142 5 1251830 1256799 ECH