Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0134 ATGGATCATCAAGGCCATGGCCAGAACCCAAATATGGGGGTTGTCGGTAGTGGAACTCAACTACCATATGGTTCTAATCCTTATCAGCAAAGCCAAATGACCGGGGTACCGGGATCAGTTGTTACGTCTTCTGGTAACATGCAATCCAGTCTTGCTTATCAGCATATTCATCAGCAACAACAGCTGCAACTTCAGCAACAACTTCAACAATTTTGGGCAAACCAATACCAGGAGATTGATAAGGTTACTGATTTCAAGAATCACAGCCTTCCCCTGGCAAGGATCAAGAAGATTATGAAAGCAGATGAGGATGTCCGAATGATATCAGCCGAGGCACCGGTTATATTTGCAAGGGCATGTGAAATGTTCATACTAGAGTTAACCCTGCGCTCCTGGAATCACACCGAGGAGAACAAGAGGAGAACCCTTCAAAAGAATGACATTGCTGCAGCAATCACAAGGACTGATATCTTCGATTTCTTGGTTGATATTGTGCCTCGTGAGGACTTGAAAGATGAAGTGCTTGCATCAATCCCAAGAGGAACAATGCAGGTTGCAGGGCCTGCTGATTCAATTCCTTATATGTGTATGCCACCTCAGCATGCACCACAAGCTGGAGCTCCCGGCGTCATAATGGGCAAACCTGTGATGGACCCAAACATGTATGCTCAGCAGCCTCATCCGTACATGGCGCCACAAATGTGGCCACATCCACAAGACCAGCGACCATCATCTCCCGATCATTAG 747 0.4672 MDHQGHGQNPNMGVVGSGTQLPYGSNPYQQSQMTGVPGSVVTSSGNMQSSLAYQHIHQQQQLQLQQQLQQFWANQYQEIDKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMQVAGPADSIPYMCMPPQHAPQAGAPGVIMGKPVMDPNMYAQQPHPYMAPQMWPHPQDQRPSSPDH 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0134 248 MobiDBLite consensus disorder prediction 1 20 - -
Lal5g0134 248 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 248 - -
Lal5g0134 248 SUPERFAMILY Histone-fold 66 161 IPR009072 GO:0046982
Lal5g0134 248 Gene3D Histone, subunit A 50 167 IPR009072 GO:0046982
Lal5g0134 248 MobiDBLite consensus disorder prediction 225 248 - -
Lal5g0134 248 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 248 - -
Lal5g0134 248 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 89 152 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0134 Lal-Chr5 1214248 1217142 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0134 1 235 CCAAT-HAP5 Transcription Factor Family AT1G08970 63.136 2.10e-87 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lal5g0134 CBFD_NFYB_HMF 5.3e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0134 K08066 - gmx:100527803 421.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0134 5 1214248 1217142 Lal18g0347 18 2975284 2977927 LSH
Lal5g0134 5 1214248 1217142 Lal12g0599 12 4301091 4301465 PCT
Lal5g0134 5 1214248 1217142 Lal13g0659 13 4257679 4260262 PCT
Lal12g0599 12 4301091 4301465 Lal5g0134 5 1214248 1217142 PCT
Lal13g0659 13 4257679 4260262 Lal5g0134 5 1214248 1217142 PCT