Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0132 ATGTGTTTGCCTGATGGAGAAAGAGATAGGGTAAGAGATATGGCACTAGAAGCAATGGTGTATTCACAACAATCACAACAATACCCTTTTAGTTATCATGGATCAAACAAAAACCTCAACAACAACAACAACCTTGAAAAACATGAATATGATGAACAAGCCTCTAATATTATTACTTCTTTTCTACAAAACCATATAGAAAATAATTACCCTTTTGTAGAATCATCATCATCATCAATGTTAATACCACATATGAATATTGATGAAGTGCATGTTCCTAATGATGATGTTCCAATATCTTCAGATCAAGTCAACAACAACAACAACAACACTAACAAGTTGTTAGATAGTTCAACAATTTCTTCAGTGATTTCTAGGCCAAAGAGGAGAAGAATGAAAAGCAGAAGAAACAAAGAAGATATTGAGAATCAGAGAATGACTCATATTGCTGTTGAACGTAACAGAAGAAAACAAATGAATCACTATCTCTCTGTTCTTCGTTCTCTCATGCCTCATTCTTATGTTCAAAGGGGTGATCAAGCATCTATAGTTGGAGGTGCTATTAACTTTGTTAAGAAGCTTGAGCAGAAGCTACAATTTCTTGGTGCTAAGAAAGAAATAGTAGATGATAAATGTGATGCAAGTAAAAACATGTATTTTTCTGATTTCTTCACATTTCCACAATATTCAACAAGTGCTACTTTCTGTGAAAATTCTCTAACCATGAATGAGAAAGTGAGTGAAGTTAAGTCTGGAATTGCTGATATAGAAGTTACAATGGTGGAGACTCATGCAAATCTCAAAATAAGATCAAAGAAAAGGCCAAAACAGCTTTTGAAAATAATCACTAGTTTGCATGGAATGCATCTCACAATCTTGCATCTAAATGTTAATTCCAATGGGGAAATTGTCCTCTATTGTTTCAGTGTTAAGGTTGAAGATGATTGTAACCTTGGAACAGTGGATGAGATAGCTGAAGCTGTATACCAAATGCTGAATAGGATTCAACAAGATGCAGTAATAATGTTGAATACTTAA 1038 0.3372 MCLPDGERDRVRDMALEAMVYSQQSQQYPFSYHGSNKNLNNNNNLEKHEYDEQASNIITSFLQNHIENNYPFVESSSSSMLIPHMNIDEVHVPNDDVPISSDQVNNNNNNTNKLLDSSTISSVISRPKRRRMKSRRNKEDIENQRMTHIAVERNRRKQMNHYLSVLRSLMPHSYVQRGDQASIVGGAINFVKKLEQKLQFLGAKKEIVDDKCDASKNMYFSDFFTFPQYSTSATFCENSLTMNEKVSEVKSGIADIEVTMVETHANLKIRSKKRPKQLLKIITSLHGMHLTILHLNVNSNGEIVLYCFSVKVEDDCNLGTVDEIAEAVYQMLNRIQQDAVIMLNT 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0132 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 207 IPR036638 GO:0046983
Lal5g0132 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 143 194 IPR011598 GO:0046983
Lal5g0132 345 Gene3D - 126 210 IPR036638 GO:0046983
Lal5g0132 345 SMART finulus 149 200 IPR011598 GO:0046983
Lal5g0132 345 Coils Coil 191 211 - -
Lal5g0132 345 Coils Coil 36 56 - -
Lal5g0132 345 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 14 341 - -
Lal5g0132 345 Pfam Helix-loop-helix DNA-binding domain 144 195 IPR011598 GO:0046983
Lal5g0132 345 PANTHER MAX DIMERIZATION, MAD 14 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0132 Lal-Chr5 1185272 1188916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0132 14 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 44.654 2.67e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal5g0132 HLH 3.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0132 - - pvu:PHAVU_007G181900g 340.887
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0132 5 1185272 1188916 Lal3g1478 3 20667448 20669552 LSH
Lal5g0132 5 1185272 1188916 Lal12g0602 12 4343609 4345969 PCT
Lal5g0132 5 1185272 1188916 Lal13g0663 13 4309879 4312925 PCT
Lal12g0602 12 4343609 4345969 Lal5g0132 5 1185272 1188916 PCT
Lal13g0663 13 4309879 4312925 Lal5g0132 5 1185272 1188916 PCT