Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0100 ATGTCATTATTATCATCTCCCCCTCTAGTTTTCACAGTGAAAAAGTGCAAGCCAGAGCTAGTGATTCCAGCTATGTCCACTCCCAATGAAACTAAACTATTATCTGACATAGATGATCAACAAGGACTTCGTTTCATAGTTCCAATCATACAAATATATCCTTATGAACCCTCAATGTTAGGAAAAGATATAGTTAAAGTTATTAGAAAAGCATTAGCACTAACACTTGTTTTCTATTACCCATTTGCTGGTAGGGTTAGGGAATTAGGACCAAGTAAGAAATTGATGGTGGATTGTAATGGTGAAGGTGTCTTGTTTCTTGAGGCTGATGCAGATATAACACTTCATCAATTTGGTGACACTCTTCAACCTCCATTCTCACAACAACTTTATCATGTTCCTTCTTCACATGGAATTATTGACTCTCCCCTTCTAGTTATACAGGTCACACGCCTCAAATGTGGTGGATTCATATTTGCATTATCTATGAACCACACCATGTGTGATGGAACTGGTGTAGTACAACTCATGAATGCCATAGCTGAAATAGCTCGAGGAGCAACTGAACCTACAATCAAACCAATATGGTGTAGAGAACTCTTAAACGCAAGAAACCCACCTCACATTTCATGCAACCATCATGAATACAATGAACTATCACAAGAAAAAGGGACCATAATTTCATGTAATGATGATAACATAGTTCAACAATCTTTCTTCTTTGGACCTATGGAAATAGCTGCTATTCGTAACTTGGTTCCACAAAACCTTAAAAAAGGTACAAAGTTTGAGATTCTTATTGCATGTCTTTGGTGCTGTCTTACAAAAGCATTGCAAATACAATCACATGAAGAAGTTTATATGATGTGTGTAGTAAATGCACGTTCTATGTTAAATAATCCTCCTTTACCTATTGGGTATTATGGAAATGTTTTTGCATTCCCTGCAGCAATAACTACTGCACATAAACTTAACAAAAATCCATTTGGGTATGTTGTGGAATTAATAAAGAAAGCAAAATCTGAAGTAACAAATGAATATATGCATTCTGTTGCAGATTTAATGGTTACTAAAGGAAGACCTAAGTATAAAACTGTTAGAAGTTTTATTGTGTCAGATTTGACAAATATTGGGTTTAGAGATGTGGATTTTGGGTGGGGAAAACCAGTGTATGGTGGTTTAGCAGAAGGTGGGAGTGAGGATTTTTATGGGGTCATTTATTTCATATCTTATAAGAATGCAAATGGAGAAGAAGGTACAATTGTGCCTATTTGTCTTCCAACAAAAGCTATGATTAGGTTTGTTAAAGAGTTAGATGACATGATTGGGAACCAAAACAAACCTTCTCCTAAGTTTATTAAGTCTCTCTTATAA 1374 0.3552 MSLLSSPPLVFTVKKCKPELVIPAMSTPNETKLLSDIDDQQGLRFIVPIIQIYPYEPSMLGKDIVKVIRKALALTLVFYYPFAGRVRELGPSKKLMVDCNGEGVLFLEADADITLHQFGDTLQPPFSQQLYHVPSSHGIIDSPLLVIQVTRLKCGGFIFALSMNHTMCDGTGVVQLMNAIAEIARGATEPTIKPIWCRELLNARNPPHISCNHHEYNELSQEKGTIISCNDDNIVQQSFFFGPMEIAAIRNLVPQNLKKGTKFEILIACLWCCLTKALQIQSHEEVYMMCVVNARSMLNNPPLPIGYYGNVFAFPAAITTAHKLNKNPFGYVVELIKKAKSEVTNEYMHSVADLMVTKGRPKYKTVRSFIVSDLTNIGFRDVDFGWGKPVYGGLAEGGSEDFYGVIYFISYKNANGEEGTIVPICLPTKAMIRFVKELDDMIGNQNKPSPKFIKSLL 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0100 457 Gene3D - 231 442 IPR023213 -
Lal5g0100 457 Coils Coil 456 457 - -
Lal5g0100 457 Pfam Transferase family 12 440 - -
Lal5g0100 457 PANTHER ALCOHOL ACYLTRANSFERASE 11 444 - -
Lal5g0100 457 Gene3D - 10 218 IPR023213 -
Lal5g0100 457 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 11 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0100 Lal-Chr5 931355 933789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0100 20 438 Monolignol Biosynthesis Gene Families AT5G48930 29.655 4.48e-41 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0100 K19861 - gmx:100787907 568.926