Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0088 GCTTCTGCACCTTCCTCTCTTCTCTCTATTTCTTCTTCATTCTTCTTCAACAACAAGAACGGTGTCGTTTTCCAATTCTTCTCACTTTCTCCGATCTCTTCCATTCACTCTGGCTGGAGAAGGAGATCTGCTACTATTATTGACATGGAGCAGTATGAAATACTTGAGCAAATTGGAAAAGGTGCTTTTGGGTCTGCCCTTCTGGTAAAGCATAAGCATGAGAAGAAAAAATATGTGTTGAAGAAGATTCGCCTTGCCCGCCAAACTGAGCGCTCTCGTAGGTCTGCACACCAGGAGATGGAGCTCATCTCCAAAATGAGAAATCCATTTATTGTGGAGTATAAAGATTCATGGGTAGAGAAGGGTTGCTATGTCTGCATTATTATATGTTATTGTGAGGGTGGAGATATGGCGGAAGCTATAAAGAAAGCTAATGGTGTTATGTTTCCTGAGGAGAAACTTTGTAAGTGGCTTGTTCAACTTCTCATGGCACTTGAGTACTTGCACAAGAACCATATTCTTCATCGTGACGTTAAGTGCTCGAACATATTTTTGACAAAAGATCACAACATACGCCTTGGTGATTTTGGGCTTGCCAAAAAGTTGACTTCAGATGATCTTACTTCCTCTGTTGTAGGAACTCCTAGCTACATGTGCCCTGAGCTCCTTGCAGATATACCTTATGGTTCTAAATCAGATATTTGGTCCTTGGGATGCTGTATATATGAAATGACCTCACTCAAGCCTGCATTCAAAGCATTTGATATAGAAGCATTGATTATCAAGATCAGTAAGTCCATAGTGGCTCCACTGCCATCAAAATATTCTAGTGCATTTCGAGGTCTCATTAAAAGCATGCTGCGGAAAAATCCAGAGCTTAGGCCTAGTGCTGCAGAGTTACTTGGGCACCCACACCTTCAACCTTATGTTCATAGTATCCTTCTCAAAATCAACAGCCCTAGGCAAAGTACTTTACCAGGTCATTGGCAACAATCCAATTATGTGAAGAAAACTAGATTCTTGAACCGAGAAGATGATTCTGTTTCCATCTATAAGGATAAGTGGCATTCTTTCAGCAATTGTCAGACTTCAAATCCTAGTGTATCTGGAGCAGAGCAAGATTCTCTATGCTCTACCCGAGAAATAGATTGTACCCCGGATTATTTGAATCAAAGATTAGCTGAACTGTGTGTTGGAGATAGTCATGAAGTGAAGTCAAACGTTAAGCCAGTTGTTTCCAGAACTTCTAGTATTTCAAAGACTCCAAGAATCACTTTATCAAAAGCTTCTGCCACCCACAAGAAATCAATAAAACAGTCAAAGAATCATAAGGAGCTTCCTATTTCACACAGTACCAAACAAACTGTCCATACAACTCGCAGAGCATCATTGCCGTTGCCACAAAGTCGTGCCACTCAACAGCCTTCTCGAAGGGCCACTATTGCTTTATCTAGCAATGTAAACTCACCCAATATTTCAGTTAACGCACCCCATATTGATAAGATGGCAGAATATCCATTAGCATCATATGAAGATCAATTGTTTCCCATCAGTAGTGCTTCACCAACCTCTGCACATTGTTCCTCAAGCTTCCCTCTATGTAGCAATGATTCAACTATGATAGACAAATGCACAGTGGAGGTATGTAGTATACCACCCGTCAGGCCTAGTTCTTCTGATACTTGGCAGGGAATCAAGTGCAACATGCTCAAGGAAAACGATGAAGACAAAAGTGGCTCATATGATAAAAATGCAACTGCTGGAGCATCAAGCCACAATTCTTCAGATTTGCGCCGCCGACAGTTTGACACTTCATCATTCCAACAAAGGGCTGATGCCTTGGAGGGGTTGCTTGAGTTTAGTGCAAGATTACTACAGCAGGAAAGGTATGATGAACTTGGAGTGTTGTTAAAACCGTTTGGCCCAGGAAAGGTTTCCCCAAGGGAAACTGCTATTTGGTTGAGCAAGAGTTTCAAAGTTAACACTTTTAACTAG 1995 0.414 ASAPSSLLSISSSFFFNNKNGVVFQFFSLSPISSIHSGWRRRSATIIDMEQYEILEQIGKGAFGSALLVKHKHEKKKYVLKKIRLARQTERSRRSAHQEMELISKMRNPFIVEYKDSWVEKGCYVCIIICYCEGGDMAEAIKKANGVMFPEEKLCKWLVQLLMALEYLHKNHILHRDVKCSNIFLTKDHNIRLGDFGLAKKLTSDDLTSSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTSLKPAFKAFDIEALIIKISKSIVAPLPSKYSSAFRGLIKSMLRKNPELRPSAAELLGHPHLQPYVHSILLKINSPRQSTLPGHWQQSNYVKKTRFLNREDDSVSIYKDKWHSFSNCQTSNPSVSGAEQDSLCSTREIDCTPDYLNQRLAELCVGDSHEVKSNVKPVVSRTSSISKTPRITLSKASATHKKSIKQSKNHKELPISHSTKQTVHTTRRASLPLPQSRATQQPSRRATIALSSNVNSPNISVNAPHIDKMAEYPLASYEDQLFPISSASPTSAHCSSSFPLCSNDSTMIDKCTVEVCSIPPVRPSSSDTWQGIKCNMLKENDEDKSGSYDKNATAGASSHNSSDLRRRQFDTSSFQQRADALEGLLEFSARLLQQERYDELGVLLKPFGPGKVSPRETAIWLSKSFKVNTFN 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0088 664 SMART serkin_6 52 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g0088 664 CDD STKc_Nek 51 306 - -
Lal5g0088 664 Gene3D Transferase(Phosphotransferase) domain 1 134 369 - -
Lal5g0088 664 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 49 653 - -
Lal5g0088 664 ProSitePatterns Protein kinases ATP-binding region signature. 58 81 IPR017441 GO:0005524
Lal5g0088 664 MobiDBLite consensus disorder prediction 573 602 - -
Lal5g0088 664 MobiDBLite consensus disorder prediction 427 476 - -
Lal5g0088 664 ProSiteProfiles Protein kinase domain profile. 52 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g0088 664 SUPERFAMILY Protein kinase-like (PK-like) 34 338 IPR011009 -
Lal5g0088 664 MobiDBLite consensus disorder prediction 451 476 - -
Lal5g0088 664 Gene3D Phosphorylase Kinase; domain 1 33 131 - -
Lal5g0088 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Lal5g0088 664 Pfam Protein kinase domain 52 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g0088 664 PANTHER SERINE/THREONINE-KINASE NEK4 49 653 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0088 Lal-Chr5 849502 856462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0088 58 307 MAP Kinase Kinase Kinase AT1G53570 32.157 3.58e-37 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Lal5g0088 Pkinase 4.5e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0088 K08857 - gmx:100796019 987.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0088 5 849502 856462 Lal5g0088 5 849502 856462 ECH
Lal5g0088 5 849502 856462 Lal3g1503 3 20813583 20823392 LSH
Lal5g0088 5 849502 856462 Lal13g0695 13 4522238 4529382 PCT
Lal5g0088 5 849502 856462 Lal24g0538 24 3797511 3805648 PCT
Lal13g0695 13 4522238 4529382 Lal5g0088 5 849502 856462 PCT
Lal24g0538 24 3797511 3805648 Lal5g0088 5 849502 856462 PCT