Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0087 ATGGGAAAGACGGGGAAATGGATTAGAAACTTTCTACTAGGGAAAAAGGAAGAGAAACACAAGAAGATTGATACATTTCTCTCTGAGAATAAGGGTGCTAGCATGATGGAAAGTCAAATGATAAGTCCTAATATGAAGCGTAGATGGAGTTTTGGAAGATTAAGAGGTGGAAGTGGAAGAAAAACAAACATGGTGGCAGGGCATAAATTTTCTATATCTTTTGACTCAGGTGATTCTGCTAAATTTCAAATCCAAGCCTTGTTGGAAAGTCATGATTCAAAGAGTCTTCCAACAATACTATCACAGGTTTCTAGATACCGAAAAGATAAAAGTGTAGCTGCCACAAAGATTCAGGCTGCCTTTCGCACATACTTGGCAAGAAGAGCATTGCATGCTTTAAGGGGATTAGTCAAGTTACAGGCACTGGTAAGAGGCTACCTTGTAAGGAAGCAAACAACTGCTACACTGCGTGGCATGCATGCATTGATGGCCATCCAAGTTAGAACCCGAATTCACAGAATTCAGATGGTTGAAGAAGCAAATCTTCTTGGAAAACAGCCGCCACAACATAGAGAAATTCCTAACAACAAAGGTCTCAAAAGAAAAAATAAAAACTCAAAAGGTATGAGTATGGATGAAATGCTGGAGGTTTTGAAAAACAGAAATGCCCCTCGAGATCATTCACATGTGAAGAGCATGGAGCATGATCCCATGACATCCTATTCAAACAGTAGGTCAGTTTCAAAACATCAACATCAATACAAGAAGAATACTTTAATCACAGCACCAAACAGCCCAGAAAACTACAGATTCATGTTTGAAATGAACCCAACAACAATAGCATTATCAACTTCTGAGCGCCACCAAGTGTCTCACAATCAATCATGGTCACCAAGTTACATGAGCAAGACACAATCTTCAAAGGCAAAAGCAAGGTCTCATAGTGAACCAAAACAACGACCCAAAAAGGGAATGAGGCACAAAAGCAAGTCTATAGAATATACCAATGAACTTAGTACCTCACTGAATGGTCCAAGGCATAGCGCATCCTCTGAGTCCTCACGCTTTGATCAAAGAAGCTTCGATCATTGGATTATTAACCACTATGGGTCAACGAAAGATGGTGGGCGCGACTCCTTTGGCAGCACCATGGTTAATAGTGATTCATACTATTGA 1176 0.4022 MGKTGKWIRNFLLGKKEEKHKKIDTFLSENKGASMMESQMISPNMKRRWSFGRLRGGSGRKTNMVAGHKFSISFDSGDSAKFQIQALLESHDSKSLPTILSQVSRYRKDKSVAATKIQAAFRTYLARRALHALRGLVKLQALVRGYLVRKQTTATLRGMHALMAIQVRTRIHRIQMVEEANLLGKQPPQHREIPNNKGLKRKNKNSKGMSMDEMLEVLKNRNAPRDHSHVKSMEHDPMTSYSNSRSVSKHQHQYKKNTLITAPNSPENYRFMFEMNPTTIALSTSERHQVSHNQSWSPSYMSKTQSSKAKARSHSEPKQRPKKGMRHKSKSIEYTNELSTSLNGPRHSASSESSRFDQRSFDHWIINHYGSTKDGGRDSFGSTMVNSDSYY 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0087 391 Gene3D - 109 161 - -
Lal5g0087 391 Pfam IQ calmodulin-binding motif 113 130 IPR000048 GO:0005515
Lal5g0087 391 Pfam IQ calmodulin-binding motif 137 151 IPR000048 GO:0005515
Lal5g0087 391 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 378 - -
Lal5g0087 391 MobiDBLite consensus disorder prediction 194 208 - -
Lal5g0087 391 Pfam Protein of unknown function (DUF4005) 265 353 IPR025064 -
Lal5g0087 391 MobiDBLite consensus disorder prediction 284 356 - -
Lal5g0087 391 SMART iq_5 132 153 IPR000048 GO:0005515
Lal5g0087 391 SMART iq_5 109 131 IPR000048 GO:0005515
Lal5g0087 391 ProSiteProfiles IQ motif profile. 134 161 IPR000048 GO:0005515
Lal5g0087 391 MobiDBLite consensus disorder prediction 235 254 - -
Lal5g0087 391 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 152 IPR027417 -
Lal5g0087 391 PANTHER IQ-DOMAIN 5-RELATED 1 378 - -
Lal5g0087 391 MobiDBLite consensus disorder prediction 284 308 - -
Lal5g0087 391 MobiDBLite consensus disorder prediction 334 351 - -
Lal5g0087 391 MobiDBLite consensus disorder prediction 225 254 - -
Lal5g0087 391 MobiDBLite consensus disorder prediction 186 208 - -
Lal5g0087 391 ProSiteProfiles IQ motif profile. 110 138 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0087 Lal-Chr5 847288 849237 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0087 1 321 IQD Protein Family AT4G14750 33.434 2.51e-35 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0087 - - lang:109345769 607.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0087 5 847288 849237 Lal5g0087 5 847288 849237 ECH
Lal5g0087 5 847288 849237 Lal3g1504 3 20819927 20822155 LSH