Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0068 ATGGATTTGATTCAACAAGTTAAAGGGTATTCTGATAGAAGAGAAGAAGAAGAATTTCATGAAGAAGCAGCAGAAACTGCAGAAGAAGAAGAAGAAGAAGAAGATAATATTACAATCCCAAGAGAAGATAATATTACAATCCCAAGAGAAGAAAACAGTAGCAGGTTACAGGAACAAGATGCAGCAGCTTCCAACTACAATTTGATGAATCAAAGAAAGCAACAGTTAGAGTTGTTGGACTTGTCACTTGGAAGGAACAAGAACAATGAAGCCAAATTTGGTGGTGGTTGTGGAAATACCAGTACTACTCTTAATGATGCTGCTACTTGTTCTTCATCAATATCTTCAACCAATTACAACAACAATGAAGGAAGAGTTATTAGTAGTAATAATGTTGAGAAAGAACACATGTTTGATAAAGTAGTAACACCAAGTGATGTAGGGAAATTGAATAGACTTGTGATACCAAAACAACATGCTGAAAAGTACTTCCCACTTGATTCTTCATCAAATGAAAAGGGTCTTCTCCTAAACTTTGAAGACAGAAATGGAAAACTATGGAGGTTTAGGTACTCTTATTGGAATAGTAGTCAAAGCTATGTTATGACAAAAGGATGGAGCCGTTTTGTTAAAGATAAGAAGCTTGATTCTGGTGACATTGTTTCATTCAAACGTGGTGTTGGTGATTTGTATAGACATATATTGTATATAGATTGGAAAAGAAGAAGTGAACATCATCATCATCATCATCATCATGCTCATAATCTTCTTCATGATCCTTCACAGACAACAATTATCTCACCTTTGTTTCTTCCAAATCATTATTCCATTCCTTGGGGTGGTGGAAGATTGTACTCTTTGCCTTCTCCAAATGCAATAACAACTTCTACTACTATGGTTCATCATAACCTCAATTATAATATCTCTCATCAACAACAACAACAACAACTACAATATCATCATCAGCAATACTATGATGGTTGCAGTGGAAGTGGATTGGGTTACTTAAGGTCAACACCATCAATGTCAATGCATCAAAGCTTGCAAGAGAGAGGGAATAATATTATTGCCCCTATGATCATTGATTCTGTGCCAGTTACTTATGATCATCATCATGGTCATCAACAAGATCCTCACAATGGTACTGCTAGTAGTAATAGTAGTACTAGTAATTCAGGAAAAATGTTAAGGCTATTTGGGGTGAACATGGAATGTTCTTCTTCACCAAATGAATCTTCAACTTCATCAACATATGTCACAATGGCTAATTCACTTTCACCATCTACAAGAGGAACTTCTTCAGTGCTTTTTGATTTGGATCCATCTTTACAATACAAGATGTGA 1344 0.3542 MDLIQQVKGYSDRREEEEFHEEAAETAEEEEEEEDNITIPREDNITIPREENSSRLQEQDAAASNYNLMNQRKQQLELLDLSLGRNKNNEAKFGGGCGNTSTTLNDAATCSSSISSTNYNNNEGRVISSNNVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDSGDIVSFKRGVGDLYRHILYIDWKRRSEHHHHHHHHAHNLLHDPSQTTIISPLFLPNHYSIPWGGGRLYSLPSPNAITTSTTMVHHNLNYNISHQQQQQQLQYHHQQYYDGCSGSGLGYLRSTPSMSMHQSLQERGNNIIAPMIIDSVPVTYDHHHGHQQDPHNGTASSNSSTSNSGKMLRLFGVNMECSSSPNESSTSSTYVTMANSLSPSTRGTSSVLFDLDPSLQYKM 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0068 447 SUPERFAMILY DNA-binding pseudobarrel domain 135 236 IPR015300 -
Lal5g0068 447 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 102 421 - -
Lal5g0068 447 Coils Coil 10 36 - -
Lal5g0068 447 MobiDBLite consensus disorder prediction 368 393 - -
Lal5g0068 447 MobiDBLite consensus disorder prediction 21 38 - -
Lal5g0068 447 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 102 421 IPR044800 GO:0003700
Lal5g0068 447 MobiDBLite consensus disorder prediction 378 393 - -
Lal5g0068 447 CDD B3_DNA 136 225 IPR003340 GO:0003677
Lal5g0068 447 Pfam B3 DNA binding domain 138 233 IPR003340 GO:0003677
Lal5g0068 447 Gene3D - 131 253 IPR015300 -
Lal5g0068 447 SMART B3_2 138 243 IPR003340 GO:0003677
Lal5g0068 447 ProSiteProfiles B3 DNA-binding domain profile. 138 238 IPR003340 GO:0003677
Lal5g0068 447 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0068 Lal-Chr5 714696 717178 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0068 132 408 RAV Transcription Factor Family AT2G46870 49.648 4.28e-73 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lal5g0068 B3 9.4e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0068 - - lang:109329487 559.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0068 5 714696 717178 Lal5g0068 5 714696 717178 ECH