Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0064 ATGACAGCGAATGCGACTCTATCTCTTTCTTTCACTCCCTCTTCTCATTATTCCTTAAAGGATAAGCTCCAATTTATAGCTTCTTCAAAACGATGCGTTTCATTTTCATCACTTCCAATTATCTTAACTTATAAAGCTAGGGTTCGTACAGCATTTGCAGCATTGGTAACAGAGCGCGTAAACGACGACGTTTCTAACGAAGAAAAAGAAGAAGAACAATGGAAGAAGCCAATAGCTACTGAAGTTTACGTTTGTAACATTCCAAGAAGCATTGAATCTGATTATTTACTTAATCTGTTCAATCCTCACGGTGATGTTTTATCCGTTGAGGTTTGCCGGAATGCTGAGACTGGTGAAAGTAAAGGGTGTGCTTATGTCACATTGGGATCTATTAACTCAGCAAGAAATGCAGTTTCGGCATTGGATGGATTGGATGTTGGTGGGCGGGAAATGCGGGTTAGATTTTCGGTTGAGATGAATCGTAGAGGGAAGAATCTCAAGATACTGAACTCGTCACCGAAGAAAGTTATATACTATGAAGGCCCTCATAAGTTGTATGTTGGGAATCTTCCCAGGCCTGTTAGGCCTGAAGAATTAAGACATCTCTTTGTTAAATTTGGTACGGTGGCAAGTTTAAGGATACTGATAGATCAAAGGGAGGGGAGAACCCGAGTCTACGCGTTTGTTTCTTTCCTTTCAGAGAAAGAACGTGATGCAGCAATGTCCATCAATGGAATAGAATTCGGTGGTCGTAAACTAGTGGTTAGAGAAGGAGTCGAAAAGTCTGAAAGTTAA 795 0.4063 MTANATLSLSFTPSSHYSLKDKLQFIASSKRCVSFSSLPIILTYKARVRTAFAALVTERVNDDVSNEEKEEEQWKKPIATEVYVCNIPRSIESDYLLNLFNPHGDVLSVEVCRNAETGESKGCAYVTLGSINSARNAVSALDGLDVGGREMRVRFSVEMNRRGKNLKILNSSPKKVIYYEGPHKLYVGNLPRPVRPEELRHLFVKFGTVASLRILIDQREGRTRVYAFVSFLSEKERDAAMSINGIEFGGRKLVVREGVEKSES 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0064 264 Gene3D - 165 264 IPR012677 -
Lal5g0064 264 Gene3D - 54 164 IPR012677 -
Lal5g0064 264 PANTHER OS02G0815200 PROTEIN 21 263 - -
Lal5g0064 264 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 21 263 - -
Lal5g0064 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 152 IPR000504 GO:0003723
Lal5g0064 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 253 IPR000504 GO:0003723
Lal5g0064 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 260 IPR000504 GO:0003723
Lal5g0064 264 SUPERFAMILY RNA-binding domain, RBD 180 262 IPR035979 GO:0003676
Lal5g0064 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 158 IPR000504 GO:0003723
Lal5g0064 264 SUPERFAMILY RNA-binding domain, RBD 62 165 IPR035979 GO:0003676
Lal5g0064 264 SMART rrm1_1 81 154 IPR000504 GO:0003723
Lal5g0064 264 SMART rrm1_1 184 256 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0064 Lal-Chr5 674998 677159 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0064 8 263 Eukaryotic Initiation Factors Gene Family AT3G16380 29.961 3.23e-18 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0064 - - lang:109345739 368.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0064 5 674998 677159 Lal5g0064 5 674998 677159 ECH