Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0062 ATGTCGGAAGGTGCAGAAATTAATGAGCGTGTGGACTTTGAGGAGGAAAATTATATGGAAGAAATTGATGATGATGATGTTGAAGAGCAAATAGACGATGATGGAGTAGATGGGAGTGAAGATGAAAATGTTGAAGGTAGTGCTGACGAACATGAGGGTGAAGAGTCAGCAGAAGGTGCTGGTGGAAAAGACCAATTGCCTCAAGCGGAAAGAAGTGAAATTGCTAATGAGTTTTTCGAAAATGAACAAAAATCGGCTTCTGTAAATGAAGATGAGAAAGAGAAGCACAATGAACTTCTTGCCCTTCCTCCTCATGGTTCCGAGGTCTTTATTGGTGGACTGCCTCGGGATGCACATGAAGATGATTTAAGGGAATTGTGTGAGTTGATGGGCGATGTTGTTGAGGTGCGATTAATGAAAGACAAGGACACTGGAGTAAACAAGGGTTATGCTTTTGTGGCTTTTAAAACAAAAGAGGTCGCCCAGAAGGCCATTGAAGAGATACATAACAAGGAATTTAAGGGTAAAACTTTGAGGTGTTCTTTGTCTGAAACAAAACACAAATTATTCATAGGTAGCATTTCAAAAACTTTGACCGAGGATGAGTTTAGGAAAGTACTTGAGAATGTTGGTCCTGGACTTGAAAACATCGATCTCAAAAAGGACCCTCTGAATCCAACCAGGAATCGTGGTTTTGCTTTTGTTTCGTATTACAATAATGCATGTGCCGATTATTCACGGCAGAAGATGTCTGATGCGAGTTTTAAGCTGGATGGAGGTACCCCTTCTGTCACATGGGCTGATCCAAAGACCTCATCTGACCATTCTGCTTCTTCACAGGTTAAAGTTCTGTATGTGAAAAACATACCTGAGAATGTTAGTACCGAACAACTGAAAGAACTATTCCGTCGTCATGGAGAAGTAACAAAAGTGGTCATGCCACCTGGTAGAGCTGGAGCAAAACGTGATTTTGGTTTCATTCATTATGCAGAGAGGTCAAGTGCATTGGAAGCTATAAAAGATACAGAGAAATATGAAATCGATGGCCAAGAGCTTGAAGTTGTTCTTGCCAAGCCTCAAGCCGAGAAAAAATATGATGGAGGTTATGCATACAATCCTGGATTTCATTCAAACCATCTTCCACATCCTGCATATGGTGCCTTTTCTGGAAATCTTTATGGCTCCGGAGAGGGTGGCTATGGTGTTTCTGCTGGTTACCATCAGCCTATGATATACGGTAGGGGTCCAATGCCAGTAGGCATGCAGATGGTTCCGATGGTATTACCCGATGGTCAAATCGGCTATGTCCTTCAACAGCCTGGTGTACAAGGGCCACCCGCTCGACCCCGTAGAAACGATCGAAATGATGGTCGAAATGGTCCAGGAAGGCGAGGTGGTGATGGCAATGATGATGGCAATCGTAGAAGGTATCGGCCTTATTAG 1443 0.4304 MSEGAEINERVDFEEENYMEEIDDDDVEEQIDDDGVDGSEDENVEGSADEHEGEESAEGAGGKDQLPQAERSEIANEFFENEQKSASVNEDEKEKHNELLALPPHGSEVFIGGLPRDAHEDDLRELCELMGDVVEVRLMKDKDTGVNKGYAFVAFKTKEVAQKAIEEIHNKEFKGKTLRCSLSETKHKLFIGSISKTLTEDEFRKVLENVGPGLENIDLKKDPLNPTRNRGFAFVSYYNNACADYSRQKMSDASFKLDGGTPSVTWADPKTSSDHSASSQVKVLYVKNIPENVSTEQLKELFRRHGEVTKVVMPPGRAGAKRDFGFIHYAERSSALEAIKDTEKYEIDGQELEVVLAKPQAEKKYDGGYAYNPGFHSNHLPHPAYGAFSGNLYGSGEGGYGVSAGYHQPMIYGRGPMPVGMQMVPMVLPDGQIGYVLQQPGVQGPPARPRRNDRNDGRNGPGRRGGDGNDDGNRRRYRPY 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0062 480 MobiDBLite consensus disorder prediction 13 52 - -
Lal5g0062 480 SUPERFAMILY RNA-binding domain, RBD 188 275 IPR035979 GO:0003676
Lal5g0062 480 MobiDBLite consensus disorder prediction 436 480 - -
Lal5g0062 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 284 352 IPR000504 GO:0003723
Lal5g0062 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 179 IPR000504 GO:0003723
Lal5g0062 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 253 IPR000504 GO:0003723
Lal5g0062 480 Gene3D - 188 268 IPR012677 -
Lal5g0062 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 282 359 IPR000504 GO:0003723
Lal5g0062 480 MobiDBLite consensus disorder prediction 449 480 - -
Lal5g0062 480 CDD RRM_SF 109 181 - -
Lal5g0062 480 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q 2 477 - -
Lal5g0062 480 SUPERFAMILY RNA-binding domain, RBD 103 186 IPR035979 GO:0003676
Lal5g0062 480 SMART rrm2_1 108 181 IPR003954 GO:0003676
Lal5g0062 480 SMART rrm1_1 108 181 IPR000504 GO:0003723
Lal5g0062 480 SMART rrm1_1 283 355 IPR000504 GO:0003723
Lal5g0062 480 SMART rrm1_1 188 265 IPR000504 GO:0003723
Lal5g0062 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 269 IPR000504 GO:0003723
Lal5g0062 480 CDD RRM3_hnRNPR_like 281 359 - -
Lal5g0062 480 Gene3D - 9 187 IPR012677 -
Lal5g0062 480 Gene3D - 270 405 IPR012677 -
Lal5g0062 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 185 IPR000504 GO:0003723
Lal5g0062 480 PANTHER GEO13361P1-RELATED 2 477 - -
Lal5g0062 480 SUPERFAMILY RNA-binding domain, RBD 276 374 IPR035979 GO:0003676
Lal5g0062 480 MobiDBLite consensus disorder prediction 1 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0062 Lal-Chr5 658257 662326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0062 109 480 Eukaryotic Initiation Factors Gene Family AT2G23350 24.634 4.50e-17 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0062 K13161 - gmx:100800974 698.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0062 5 658257 662326 Lal5g0062 5 658257 662326 ECH