Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0056 ATGAAGATGTTATGGGAGGAAAATGAAAAGGCTATGGTAGCTAATGTTCTAGGACAAAAAGCTTTGAATTTCTTAATTTCAAATTCAGTGTCCAATGAGATTATCTTAATGGCTGTTGGTAGTGATGAGTGTCTTCAGAATAAGCTCTCTGATCTGGTAGAGAAACCCAATGTTTCAAATTTCAGTTGGAACTATGCAATTTTCTGGCAACTTTCTCAGTCAAAATCTGGTAATTGGGTACTTGGTTGGGGTGATGGGTGTTGTAGGGAACCAAATGAAGGAGAAGAAGAATATAAAAGAAAGGTTTTAAGGCCTTGTTTGGATGATAATGATGATGATGATGATGAGGATTTGGTGATGCAGCAATGTATGAGGAAGAAGGTGCTTCAGAAGCTTCACACAACTTTTGGTGGTTCAGATGAAGAAAACTATGTGGTTGGTCTTGATCATGTTACTGACACAGAGATGTTCTTTCTTTCTTCAATGTATTTTTCTTTCCCTAAGGGAATTGGTGGGCCAGGTAAGTGTTTTGAATCTGGGAAGCATGTGTGGATTTTGGATGCATTGAATAATAGTAATAATTCAGATTACTGTGTGAGATCTTACTTGGCTAGTTCAGCTAGATTTCAAACCATTGTTTTAGTGCCTACTGATTTGGGAGTTGTGGAGTTAGGTTCTGTAAGATTGTTACATGAGAATTCTGAATTGTTAAAATCCATAAAAACTGTGTTTTCATCATCATATTCATACCATAGTGCTAATGTTAAGCCAATTTTACCTATACCATTGACTGTTGTTACTGAAAAGAGAGATGAAAGTAATGTTGTTTTTCATGGTTTGCCGATTCGGGGCAGTAATAATAAGGTAGATGGAATTCCGAAGGTTTTTGTAAAACCCGGTTTGGATTCGGGTTTTACTCATTTTAGGGAGAAACTTGCTATTAGGAAAATGGAGGAAAGGCCATGGAGAGGTTGTGGCCACCCCAATGGGAAGGATATTAACTTTCCTAATGCTGCTCCTAGAAATGGTATTCATTATGATTCAAGTTGGACAGGGAATCGAGGTATGATGAGGCAGCCTAGCTCGGCTGAAATTTTCGCTAATGGTGTGAGACGAGATTTTAGGCTTAACAACTATCAACCTCAAAGGCAGGTCCAAATGCAAATTGATTTCTCAGGAGCTACTTCAAGGCCTTTAGTGAGACCGGTTGTTGGTGAATCAGAATTATCGGATGTTGAGGCATCTTTCAAGGAAGAGCAGTCGGGTGCAGCCGATGATAGGAGACCGAGGAAACGGGGCAGGAAGCCTGCAAATGGAAGGGATGAACCACTCAATCATGTGGAGGCAGAGAGGAAAAGGCGCGAGAAGCTGAACCAACGTTTCTATGCATTACGATCGGTTGTGCCTAATATATCCAAGATGGACAAGGCATCCTTATTAGGCGATGCCATTGCTTACATTAATGAGCTTCAAGCAAAGCTCAAGATGCTGGAATCTGATAAAGAGACATTCATAAGCACTTCAAGAAAGGATGTATCAGAAAATCATCAGAATCGAGCTCCCGATGTGGATATTCAAGCTTCTCAAGACAAGGTAACTGTAAAGGTGAGTTGCCCTCTTGATACTCATCCTGTTTCAAAAGTAGTCCAAACATTCAAAGATGCAGAAATCAACGTAGTCGAGTCGAAACTCGCCGCTGCAAACGATACCGTATTCCATACATTTGTAATTAAATCGAAAGGGTCTGAACAGATTACAAAGGACAAGTTGATTGCAGCATTTTCCCAAGAATCCAACAACTTAAAAAATTAG 1812 0.3979 MKMLWEENEKAMVANVLGQKALNFLISNSVSNEIILMAVGSDECLQNKLSDLVEKPNVSNFSWNYAIFWQLSQSKSGNWVLGWGDGCCREPNEGEEEYKRKVLRPCLDDNDDDDDEDLVMQQCMRKKVLQKLHTTFGGSDEENYVVGLDHVTDTEMFFLSSMYFSFPKGIGGPGKCFESGKHVWILDALNNSNNSDYCVRSYLASSARFQTIVLVPTDLGVVELGSVRLLHENSELLKSIKTVFSSSYSYHSANVKPILPIPLTVVTEKRDESNVVFHGLPIRGSNNKVDGIPKVFVKPGLDSGFTHFREKLAIRKMEERPWRGCGHPNGKDINFPNAAPRNGIHYDSSWTGNRGMMRQPSSAEIFANGVRRDFRLNNYQPQRQVQMQIDFSGATSRPLVRPVVGESELSDVEASFKEEQSGAADDRRPRKRGRKPANGRDEPLNHVEAERKRREKLNQRFYALRSVVPNISKMDKASLLGDAIAYINELQAKLKMLESDKETFISTSRKDVSENHQNRAPDVDIQASQDKVTVKVSCPLDTHPVSKVVQTFKDAEINVVESKLAAANDTVFHTFVIKSKGSEQITKDKLIAAFSQESNNLKN 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0056 603 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 444 504 IPR036638 GO:0046983
Lal5g0056 603 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 45 244 IPR025610 -
Lal5g0056 603 SMART finulus 447 496 IPR011598 GO:0046983
Lal5g0056 603 CDD bHLH_AtAIB_like 438 502 - -
Lal5g0056 603 MobiDBLite consensus disorder prediction 411 452 - -
Lal5g0056 603 Gene3D - 435 505 IPR036638 GO:0046983
Lal5g0056 603 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 4 599 - -
Lal5g0056 603 PANTHER MYC 4 599 IPR045084 GO:0003700|GO:0006355
Lal5g0056 603 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 441 490 IPR011598 GO:0046983
Lal5g0056 603 Coils Coil 487 507 - -
Lal5g0056 603 Pfam Helix-loop-helix DNA-binding domain 445 491 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0056 Lal-Chr5 598436 600247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0056 2 600 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 48.773 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal5g0056 bHLH-MYC_N 5.8e-51 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0056 - - adu:107491937 758.059