Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0053 ATGGCACATCTGAGTAATACTCAAGCTGAAACAGGTTTTGGAGATGATCTATATAGAGAGCAATGGAAATTATGTGCAGGGCCTTTGGTGAATGTTCCTCATGTTGAAGAAAGAGTTTATTACTTTCCTCAAGGTCACATAGAACAATTGCAAGCATCAACTAATCAGGAATTGAACCAGCAAATTCCTCATTTCAATCTTCCATCCAAGATTCTATGCCGTGTTATGCACATTCAGTTGTTGGCTGAACAAGAAACCGATGAAGTTTATGCTCGTATCACCTTGCTTCCAGAATCAGATCAAAATGAGCCTACAAGTCCGGATCCATATCCACCCGAAACTCAAAAACAGACCTTTCACTCTTTTAGCAAGAAATTAACTGCATCTGATACTAGCACACATGGAGGATTTTCAATTCTGCGTAGACACGCGACAGAGTGCTTACCTCAATTGGACATGTCACAACAAACCCCAACCCAAGAGTTAGCAGCCAAGGATCTTCATGGGTTTGAGTGGAAGTTCAAGCATATATTCAGAGGCCAACCAAGAAGGCATTTGCTCACAACTGGGTGGAGTACATTTGTCACATCGAAAAGATTGGTTGCTGGAGATGCTTTTGTGTTCTTAAGGGGAGAGAACGGTGAACTGAGAGTTGGTGTCAGGCGCCTCGCTCGGCATCAGAGTCCTACGCCTTCATCTGTGATATCAAGCCAAAGCATGCATCTTGGAGTGCTTGCCACTGCTTCCCATGCTGTTATGACTCGAACGATGTTTGTCGTTTATTACAAACCAAGGACTAGCCAATTTATTATTGGTCTGAACAAATATCTTGAAGCAGTAAACAATAAATTTTCAGTTGGCATGCGATTCAAGATGAGGTTTGAGGTTGAGGACTCTCCTGAGAGAAGGTTTTCCGGTACTATTGTCGATGTTGGAGATGTTTGTGCAGGATGGTCAAATTCTCAATGGCGTTCATTGAAGGTTCGATGGGATGAATCGGCAACAATTCCTAGGCCGGAGAGGGTTTCTTCTTGGGAGTTAAAACCGTTTGTAACTTCTACTGTAACTGTCCCTCAGCCAGTGGTGAAGAGCAAAAGATCTAGGCCTGTTGATGTTCAATCTTCTGAAGTTGCTCCTAATTCTCCTGCTTCAACTTTCTGGTATCAAGGATCATCCTTGTCACATGAGCCTACACAATTAGGCGAAGTTCAAAGCAACGAAAACCACGACTTGTGGTCTTCGAGGCCGAAAGAAATTAATGGCAATTCAAAGAATACCAACTCCATCACCTCTAGAGTCCGCATGGAAGGAATATGGTCTTCATCATCTAACATTAGTTGCCCTCGTGCTTCATCTACGTCTAAGTCTAACGATGACTTGATACACGAGCGAAATGACAACGGTAAAAAGGTTGATAAGCGCACAGATATTTGGGTATTTGGAGTGAATTTGAGTAGCAACTCTACTAACGTTGCACTTCAAGAGAAGGAGCTTGGATCAATAGCTGTCATTCATAGCGGTCCCGAAGGATCTTTTCCTACTATTGCTCCATGTGAAACTGAAAATGGTCAGAATCTCAATAGTTCAGTGTCCAATAAGGAGCAGAAGCAAATTATTTCCGGCACGTCACTAAATGAGAAGCAGAACAAGCAGGCCTCTGTACCGTCATCGAGGACTCGTACTAAGGTGCAAATGCAAGGTGTTGCTGTCGGTCGTGCTGTCGATTTGACCGTGTTGAATGGCTACGATGATCTAGTAGATGAGCTTGAGAAATTATTTGACATTAAGGGAGAGCTTCGTTCACAAAAATGGGTGATTACTTATACCGACGATGAAAATGACCGGATGCAAGTTGGTGATGATCAATGGCCCGAATTCTGTACTATGGTGAAGAGAATTTTCATTATTTCAAAGGAAGATGTAAAGAAGATAAAATCGAAAGATTACGCCACTTCATCCGAGATCGAGGAAAGTTTGCTGAACACAGATTTCACAGAATAG 2001 0.4253 MAHLSNTQAETGFGDDLYREQWKLCAGPLVNVPHVEERVYYFPQGHIEQLQASTNQELNQQIPHFNLPSKILCRVMHIQLLAEQETDEVYARITLLPESDQNEPTSPDPYPPETQKQTFHSFSKKLTASDTSTHGGFSILRRHATECLPQLDMSQQTPTQELAAKDLHGFEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGENGELRVGVRRLARHQSPTPSSVISSQSMHLGVLATASHAVMTRTMFVVYYKPRTSQFIIGLNKYLEAVNNKFSVGMRFKMRFEVEDSPERRFSGTIVDVGDVCAGWSNSQWRSLKVRWDESATIPRPERVSSWELKPFVTSTVTVPQPVVKSKRSRPVDVQSSEVAPNSPASTFWYQGSSLSHEPTQLGEVQSNENHDLWSSRPKEINGNSKNTNSITSRVRMEGIWSSSSNISCPRASSTSKSNDDLIHERNDNGKKVDKRTDIWVFGVNLSSNSTNVALQEKELGSIAVIHSGPEGSFPTIAPCETENGQNLNSSVSNKEQKQIISGTSLNEKQNKQASVPSSRTRTKVQMQGVAVGRAVDLTVLNGYDDLVDELEKLFDIKGELRSQKWVITYTDDENDRMQVGDDQWPEFCTMVKRIFIISKEDVKKIKSKDYATSSEIEESLLNTDFTE 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0053 666 MobiDBLite consensus disorder prediction 523 559 - -
Lal5g0053 666 Gene3D - 283 355 - -
Lal5g0053 666 MobiDBLite consensus disorder prediction 362 381 - -
Lal5g0053 666 Gene3D - 554 645 - -
Lal5g0053 666 Pfam B3 DNA binding domain 122 222 IPR003340 GO:0003677
Lal5g0053 666 MobiDBLite consensus disorder prediction 442 466 - -
Lal5g0053 666 Pfam AUX/IAA family 531 594 IPR033389 -
Lal5g0053 666 Pfam AUX/IAA family 599 640 IPR033389 -
Lal5g0053 666 PANTHER AUXIN RESPONSE FACTOR 11 9 649 - -
Lal5g0053 666 SUPERFAMILY CAD & PB1 domains 553 633 - -
Lal5g0053 666 Gene3D - 119 223 IPR015300 -
Lal5g0053 666 SUPERFAMILY DNA-binding pseudobarrel domain 113 251 IPR015300 -
Lal5g0053 666 Pfam Auxin response factor 248 327 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lal5g0053 666 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677
Lal5g0053 666 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 649 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lal5g0053 666 SMART B3_2 122 224 IPR003340 GO:0003677
Lal5g0053 666 ProSiteProfiles PB1 domain profile. 558 649 IPR000270 GO:0005515
Lal5g0053 666 MobiDBLite consensus disorder prediction 96 116 - -
Lal5g0053 666 CDD B3_DNA 120 222 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0053 Lal-Chr5 553371 557998 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0053 14 644 B3 DNA Binding Superfamily AT4G23980 57.862 0.0 655
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lal5g0053 B3 3.9e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0053 K14486 - gmx:100820503 880.937