Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0048 ATGACGAGACCAGTTTTCGTAGGGAATTTTGAGTTTGATACTCGTCAATCAGAGCTTGAACGTTTATTCTCAAAATACGGAAGGGTTGAACGCGTTGATATCAAATCTGATTCATCTGCATCAGTCCTCAAATATATGCAGGTGTTGTATTCTGTTGTTCTTGATGACAGTGGAAATGATTTCCTGATTTGGGTGCTGTACTGTCTGCCAGGGATAACATGTTTACTTCTAATCATTGTTTATGTTTCTAATACCAGTTCTGGCGTTTCAGGTTATGCTTTTGTCTATTATGAGGACGAGCGAGATGCTGAAGATGCAATTCGCGTGCTTGACAATTTTCCATTTGGTTATGAGAAGCGAAGGCTGTCTGTAGAGTGGGCTAGGGGCGAACGTGGCCGCCATCCTAATGGCTCAAGGGCAAACCAGAGGCCAACAAGAACCCTATTTGTTATTAATTTTGATCCAATTCGTACTAAAGATCGTGATATAGAAAGACATTTTGAACCTTATGGGAAGATTCATCATGTTCGAATCCGTCGGAATTTTGCATTTGTACAGTTTGAAACACAGGAAGACGCTGCTAAAGCTCTTGAGTGTACACATATGAGTAAAATACTGGACAGAGTGGTGTCTGTGGAGTATGCCCTGAGGGATGATAGTGAGAGGGGTGACAGATATCATGACAGTCCTAGAAGAGGTGGTTATGGTAGATCACCGAGTCCAGCTTATCGGAGGCGACCAAGTCCTGATTATGGTCGTCCACGCAGCCCTGTGTATGATAGGCGTAGGAGCCCTGATTATGGTAGGGCTAGGAGCCCTGATCATGGTAGGGCTAGGAGCCCTGATCATGGTAGGCCTAGGAGCCCTGAACATGGTAGATATCGCAGTCGTTCACCAATTCGAAGGTCATGA 912 0.4452 MTRPVFVGNFEFDTRQSELERLFSKYGRVERVDIKSDSSASVLKYMQVLYSVVLDDSGNDFLIWVLYCLPGITCLLLIIVYVSNTSSGVSGYAFVYYEDERDAEDAIRVLDNFPFGYEKRRLSVEWARGERGRHPNGSRANQRPTRTLFVINFDPIRTKDRDIERHFEPYGKIHHVRIRRNFAFVQFETQEDAAKALECTHMSKILDRVVSVEYALRDDSERGDRYHDSPRRGGYGRSPSPAYRRRPSPDYGRPRSPVYDRRRSPDYGRARSPDHGRARSPDHGRPRSPEHGRYRSRSPIRRS 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0048 303 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 5 270 - -
Lal5g0048 303 SUPERFAMILY RNA-binding domain, RBD 3 139 IPR035979 GO:0003676
Lal5g0048 303 SMART rrm1_1 147 213 IPR000504 GO:0003723
Lal5g0048 303 SMART rrm1_1 4 125 IPR000504 GO:0003723
Lal5g0048 303 MobiDBLite consensus disorder prediction 220 303 - -
Lal5g0048 303 Gene3D - 1 140 IPR012677 -
Lal5g0048 303 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED 5 270 IPR029537 GO:0000398|GO:0005681
Lal5g0048 303 MobiDBLite consensus disorder prediction 248 296 - -
Lal5g0048 303 Gene3D - 141 229 IPR012677 -
Lal5g0048 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 3 129 IPR000504 GO:0003723
Lal5g0048 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 148 210 IPR000504 GO:0003723
Lal5g0048 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5 37 IPR000504 GO:0003723
Lal5g0048 303 SUPERFAMILY RNA-binding domain, RBD 136 239 IPR035979 GO:0003676
Lal5g0048 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 146 217 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0048 Lal-Chr5 534077 536758 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0048 77 208 Eukaryotic Initiation Factors Gene Family AT4G34110 30.714 1.15e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0048 K12893 - gmx:100797709 361.688