Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0045 ATGTTGGAAGAAGATGAGCATAGCCATAATCAGTTTTCATCTTCAATTTCAAAGTTACATTGCAATATTCCAACCACTACAAGTGTTCATGATCTTCTTGAATGCCCTGTTTGCACCAATTCAATGTATCCTCCAATTCATCAGTGCCACAATGGGCATACCCTTTGTTCAACATGTAAGACAAGGGTACACAACAGATGCCCGACTTGTAGACAGGAACTCGGTGACATAAGGTGTTTGGCGTTGGAGAAGATAGCGGAATCACTTGAACTGCCTTGCAGATATATCTCTCTCGGGTGTCCGGAGATATTTCCCTATTACAGCAAACTCAAACATGAGGCTATTTGTAACTTCAGACCCTATAACTGTCCTTATGCTGGTTCGGACTGTTCTGCCGTTGGAGATATTCCATACCTTGTTGCTCACTTGAGGGATGACCACAGGGTTGATATGCATTCCGGATGCACTTTCAATCATCGCTATGTCAAGTCTAATCCCATGGAAGTAGAAAACGCTACGTGGATGCTAACGGTGTTTCACTGTTTTGGACAGTATTTTTGTCTCCATTTTGAAGCCTTCCAGCTTGGTATGTCACCTGTTTACATGGCGTTCCTCCGTTTCATGGGCGACGAAAGAGAGACGCAGAACTACTGCTACAGCCTGGAGGTAGGAGGTAACGGACGTAAACTAACTTTCGAAGGGAGTCCGCGAAGCATTCGAGATAGCCATAAGAAAGTCAGAGATAGTCATGACGGCCTCATCATATACCGGAACATGGCGCTTTTCTTCTCCGGTGTCGATAAGAAAGAGTTGAAGCTAAGAGTGACAGGAAGGATATGGAAAGAACAGCAAAACCCTGATGGTGAAGTATGCATACCCAACATGTATACTTAA 894 0.4407 MLEEDEHSHNQFSSSISKLHCNIPTTTSVHDLLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYISLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSDCSAVGDIPYLVAHLRDDHRVDMHSGCTFNHRYVKSNPMEVENATWMLTVFHCFGQYFCLHFEAFQLGMSPVYMAFLRFMGDERETQNYCYSLEVGGNGRKLTFEGSPRSIRDSHKKVRDSHDGLIIYRNMALFFSGVDKKELKLRVTGRIWKEQQNPDGEVCIPNMYT 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0045 297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 143 IPR013083 -
Lal5g0045 297 ProSiteProfiles Zinc finger SIAH-type profile. 88 148 IPR013010 GO:0008270
Lal5g0045 297 PANTHER UBIQUITIN LIGASE SINAT3 1 289 - -
Lal5g0045 297 SUPERFAMILY RING/U-box 29 75 - -
Lal5g0045 297 Pfam Seven in absentia protein family 77 276 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lal5g0045 297 CDD Sina 149 277 - -
Lal5g0045 297 ProSiteProfiles Zinc finger RING-type profile. 35 71 IPR001841 -
Lal5g0045 297 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 289 - -
Lal5g0045 297 CDD RING-HC_SIAHs 33 71 - -
Lal5g0045 297 SUPERFAMILY TRAF domain-like 88 280 - -
Lal5g0045 297 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 149 276 IPR008974 GO:0005515
Lal5g0045 297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 77 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0045 Lal-Chr5 514328 517531 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0045 2 283 C3H Transcription Factor Family AT2G41980 73.404 7.80e-158 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0045 K04506 - gmx:100782764 595.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0045 5 514328 517531 Lal5g0045 5 514328 517531 ECH
Lal5g0045 5 514328 517531 Lal18g0290 18 2369167 2372173 LSH