Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0041 ATGGAAATCTTGAAACTGTTCTTTTACTTATTCATCATTCCTGTCATATATGCCTCATATGATTGCCAAATTTCATGGTGCGGCGACGAAGATATCGTTATTCGATTCCCCTTTGAACTAGAAGGTGAGCAACAAGATCCTTATTGTGGCTATCCTGGCTTCAAATTACTCTGTACTAATGATAGCAAAGCAGTTCTAAAACTTCCTCACACAGGAGAGTTTTATGTCAGAAACATAAACTATATCAGACAACAGATTCAAGTATATGACCCTGATCATTGCCTTCCGAAACGTCTTCTAAGCCTCGATCTTTCAGGTTCTCCTTTCGCTGCAATTTTTCACAATAATTACACCTTCTTAAGCTGCCCATATCCTAGCACAGAATCACAATTGGTTCCTATTGAATGTCTAAGCAATTCTACAAACTTTGTGTCTTCTATTCCTTCAGTAAACTTGACCAATTCATTGCTTGAGTCTTGCTATGTTATTAGAAATATTTCGGTTCCAGTTGAATGGCAAGGACTACAATATGAGGGAAATTTCAGAGATGATCTCAGTGAAGATCTTAGATTAACATGGTATACACCTGACTGCACAGAATGTAAATCACAAGGGGGGTTATGTGGATTTGATAATGGAAAAAGTGACCAAGTTGGTTGTTTCTCTGATTACCAAACAGGTCATTCACAAAATAGCTCTCAAGTTATGAGAATCCTATCATTATCCATTGTGGGAGCATCTCTCATATGTGCTATTGGGGTGATATGCTTTGTATACTTCAAGCACAGAAGCATAGCATCAAGAATTGCAGCTGGACAGAGATCTGCAACAGCTGCAATATCACTACAACCTGACATGGCTACAACGGGTCTGGATGAGTCTACAATTGAGTCATATCAGAAGCTAGTGTTAGGGGAGAGCCGACGATTGCCCGGACCAAATGGTGAATGCTGCTCGATATGCTTGTCAGACTACAATAGCAAAGAGACAGTCAGATGCATTCCTGAATGCAGGCACTGTTTCCATGCTGAATGCATAGATAAGTGGCTTCACATGAATAGCTCATGCCCACTTTGCCGCAATTCTCCTTCCCCTTCTCATGTTCATGTCATGTCTACTAACCCTTGA 1128 0.4025 MEILKLFFYLFIIPVIYASYDCQISWCGDEDIVIRFPFELEGEQQDPYCGYPGFKLLCTNDSKAVLKLPHTGEFYVRNINYIRQQIQVYDPDHCLPKRLLSLDLSGSPFAAIFHNNYTFLSCPYPSTESQLVPIECLSNSTNFVSSIPSVNLTNSLLESCYVIRNISVPVEWQGLQYEGNFRDDLSEDLRLTWYTPDCTECKSQGGLCGFDNGKSDQVGCFSDYQTGHSQNSSQVMRILSLSIVGASLICAIGVICFVYFKHRSIASRIAAGQRSATAAISLQPDMATTGLDESTIESYQKLVLGESRRLPGPNGECCSICLSDYNSKETVRCIPECRHCFHAECIDKWLHMNSSCPLCRNSPSPSHVHVMSTNP 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0041 375 Pfam Wall-associated receptor kinase C-terminal 153 222 IPR032872 -
Lal5g0041 375 SUPERFAMILY RING/U-box 311 363 - -
Lal5g0041 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 365 IPR013083 -
Lal5g0041 375 ProSiteProfiles Zinc finger RING-type profile. 318 360 IPR001841 -
Lal5g0041 375 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 372 - -
Lal5g0041 375 PANTHER RING-H2 FINGER PROTEIN ATL21A-RELATED 4 372 - -
Lal5g0041 375 Pfam Ring finger domain 318 360 IPR001841 -
Lal5g0041 375 SMART ring_2 318 359 IPR001841 -
Lal5g0041 375 Pfam Wall-associated receptor kinase galacturonan-binding 22 90 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0041 Lal-Chr5 485820 487517 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0041 22 370 C3H Transcription Factor Family AT2G46495 44.068 1.07e-91 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0041 - - gmx:100799895 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0041 5 485820 487517 Lal5g0041 5 485820 487517 ECH
Lal5g0041 5 485820 487517 Lal6g0642 6 4179895 4194987 PCT
Lal6g0642 6 4179895 4194987 Lal5g0041 5 485820 487517 PCT