Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0040 ATGGAATCCACCACCGCTACCATGAAGATCTACAATCTCTTCGTTAAACACTTAAACGGCAAAACCCTAACCCTAAAATTCCAATCCCCAACCATCTCCTCCGATTCAATAAAATCCCACCTTTTCCACCTTACCGGAATCCCACCGCACCACCAGCGCCTAATCACCGGAAAACGCCTCATCTCCGACGAAGAAAACTCCACCATCTCATGCTCTCACAGCAGCAACACCTTCCCCACTGTTCACCTCCTTCTTCGCCTTAATGGCGGAAAGGGAGGTTTCGGGTCACTCCTTCGTGGCGCTGCGACGAAAGCGGGGCAGAAAAAAACGAACAATTTTGATGCTTGCAGAGATATGAGTGGAAGGAGACTGAGACATGTGAATGCAGAGAAGAGGTTACAGGAATGGAAGGAATCAGAAGAAGAGAGGAAGTTGGAGAAGGTGGCAGAAGAGTTTTTGAAGAAACAAATGAAGAAAGGGAAGAAAGGGAAAGGTGATGGAGAAGCACATAAGTATGTGGCTAAGTATAGGGAAGAGAGTGAAAGGTGCACTGCTGACGTGGCGTTGTCGGTGAAAGAAGCTTTGATTAATGGTAATAATGGGAAAAGGAAGGGTGATGAATGTGGTAATGGTGATGCTAAGAAATTGAAGATATGGTTTGTAACTTGTAAGGGACAGTTTGTGATTTGGGTTTTGGAGGGTAAAGAAGAGAAATGGAAGGCTTCAGAGCCATCTCATAAGATGGGGAAGAGAAAAATGAATGGAAGTGACAGTGATTATTCCAGTGGAGAAGAGAATGACGATGAGGGGGGAAATGATAAATCCATTTTATTGAATAGCCAGAATGAGTCAGACTCAAACAAGGATGATGGAAGTTCAGGTTCAGTGACTGGTCGGAAACACGGTGTAGACTCGTCAGGTTCCGGCTCATGTGAAAGTGGGTCTGAAGAAGAGAAGGAAACTGTTGTAGAAGTCAAAGTGGAATCCGTTGGACCACATAGTAGTGATACTGATCGGGTGAATGCTGTTGAGCCTGTGTTGTGTAATGAGATGGTGAAGCCTATGGCTATGGTTTATTCAGAGGCGGTAGTTTTTGATGTTAGTGCTGAAAATAATGGACATCAGGGTTGCAATGTAGTTGTTTCTGACAAACTTGATGGTGCACTAAGTCAAGCCTCAGATATTACAAGTTCAGAAAATGTGGCTGGTGCAAGCAAATGTATCGGAGTTGATCTTGAGAATAAGGCATCTGTAAATGTAGAAATCTCACCCAGCATTCCAACAATAGAGGAGTCTCTGAATTTTGGTGCTTTTAGTTCAGCTGCAGAACTTGAGGTTCTTGGCTTGGAAAGGTTGAAGTCTGAACTGCAATCCTGCGGGTTGAAATGTGGAGGCACTTTGCAGGAGCGTGCTGCAAGGCTTTTTCTTTTAAAATCCACCCCGCTCGATAAACTTCCAAAGAAGCTGCTTGCGAAGAAATGA 1482 0.444 MESTTATMKIYNLFVKHLNGKTLTLKFQSPTISSDSIKSHLFHLTGIPPHHQRLITGKRLISDEENSTISCSHSSNTFPTVHLLLRLNGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLQEWKESEEERKLEKVAEEFLKKQMKKGKKGKGDGEAHKYVAKYREESERCTADVALSVKEALINGNNGKRKGDECGNGDAKKLKIWFVTCKGQFVIWVLEGKEEKWKASEPSHKMGKRKMNGSDSDYSSGEENDDEGGNDKSILLNSQNESDSNKDDGSSGSVTGRKHGVDSSGSGSCESGSEEEKETVVEVKVESVGPHSSDTDRVNAVEPVLCNEMVKPMAMVYSEAVVFDVSAENNGHQGCNVVVSDKLDGALSQASDITSSENVAGASKCIGVDLENKASVNVEISPSIPTIEESLNFGAFSSAAELEVLGLERLKSELQSCGLKCGGTLQERAARLFLLKSTPLDKLPKKLLAKK 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0040 493 PANTHER SPLICING FACTOR SF3A-RELATED 12 492 - -
Lal5g0040 493 SMART ubq_7 11 86 IPR000626 GO:0005515
Lal5g0040 493 Gene3D - 4 92 - -
Lal5g0040 493 PANTHER REPLICATION STRESS RESPONSE REGULATOR SDE2 12 492 - -
Lal5g0040 493 SUPERFAMILY Ubiquitin-like 10 91 IPR029071 -
Lal5g0040 493 MobiDBLite consensus disorder prediction 238 258 - -
Lal5g0040 493 MobiDBLite consensus disorder prediction 238 338 - -
Lal5g0040 493 Pfam Silencing defective 2 N-terminal ubiquitin domain 11 156 IPR024974 -
Lal5g0040 493 Pfam Replication stress response SDE2 C-terminal 430 492 - -
Lal5g0040 493 MobiDBLite consensus disorder prediction 273 312 - -
Lal5g0040 493 ProSiteProfiles Ubiquitin domain profile. 11 90 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0040 Lal-Chr5 482788 485365 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0040 426 492 C2H2 Transcription Factor Family AT5G06160 47.761 8.53e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0040 K25059 - gmx:100781694 401.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0040 5 482788 485365 Lal5g0040 5 482788 485365 ECH
Lal5g0040 5 482788 485365 Lal18g0286 18 2342904 2349700 LSH