Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0026 ATGGCAAAAACAAATAAAGGGGTATCAGTATCTCATCAGCATCAATATCATGATGCTACTGTTTCTGAATTGAAGGAAAAGTTGCGTGGTTTGGTTAATATTATTCTAGAACAGAATAGTGATAATTATAATAACTACACCATTCAACAAACAACAACAGATGAAGCTATTTCTACACTTCAACTACTCAACCATTTTTATAAAAATTCTTCCTTTTCTCATAACTTAGATCATTTCCTTGTTCCTCCTCTTTTTCGATGTCCCATTTCCTCACAATTGATGTCCGATCCTGTTATTTTGTCTACTGGACAGACTTATGATAGGCCATTCATTCAAAGGTGGTTGAATGAAGGACACAGAACATGTCCTCAAACCCAGCAAGTCCTCACTCACACTATCCTCACTCCTAATTACTTGGTTCGCGACATGATTGCGCAATGGTGTAAAGATCATGACATTGAGCTACCTAAGCTTGTTCGAGATACCGATGAAGTTGTCACCAATGCAGACAAAGACCAGTTGAATTCATTGCTTCATAAGTTGTCATTGTCTCTTTCTGATCAGAAAGAAGCTGCCAAAGAGCTTCGGAAGTTAACAAAGCGAATGCCTTCGTTTCGTACGCTTTTCTCCGGTGATGTAATTCCACAGTTGCTTAGTCCATTATCAACCAGTAAGGCTTTTATGCATCCTGATCTCCATGAAGACTTGATCACAACGCTTCTGAATCTGTCAATTCATGATGATAATAAGAAAGTTTTTGGAGAAGATCCTAATGTTATTTCTCTGCTTATTGATGCATTGAAAACTGGAACCATTCAAACAAGAAGCAATGCTGCGGCTGCTATTTTCACATTATCGGCTCTTGATTCGAACAAACACATCATTGGAAAATCTGGTGTCATGAAACATTTGCTTGACCTTTTAGATGAGGGAAATCTATTAGCCATGAAAGATGCTGCATCAGCCATATTCAACCTATGTCTTGTGCATGAGAATAAATGCAGGGCTGTGAAAGAAGGCGCAGTCGAGGTTATTCTAAAGAAGATCGTCGACAACATTCTTGTTGATGAGTTGTTGGCTATACTAGCACTCCTCTCAAGCCACCCCCGGGCTGTTGAAGAAATCGGCGACCTTGGTGCTGTACCCTGCTTGCTCGGCATTATAAGGGAGACTGCCGTGTCAGAAAGGAGCAAGGAAAATTGTGTTGCAATCTTATATACAGTCTGCTACAGTGATAGAACAAAGTGGAAGGAAATTAGAGAAGAAGAAAAAGCCAATGGTACATTGTCTAACCTTGCAAAATGTGGTACATCAAGGGCAAAAAGAAAAGCTAATGGGATTCTTGAGAGGCTTAATAGATCTATCTACTTAACACACACTGCTTAA 1386 0.3939 MAKTNKGVSVSHQHQYHDATVSELKEKLRGLVNIILEQNSDNYNNYTIQQTTTDEAISTLQLLNHFYKNSSFSHNLDHFLVPPLFRCPISSQLMSDPVILSTGQTYDRPFIQRWLNEGHRTCPQTQQVLTHTILTPNYLVRDMIAQWCKDHDIELPKLVRDTDEVVTNADKDQLNSLLHKLSLSLSDQKEAAKELRKLTKRMPSFRTLFSGDVIPQLLSPLSTSKAFMHPDLHEDLITTLLNLSIHDDNKKVFGEDPNVISLLIDALKTGTIQTRSNAAAAIFTLSALDSNKHIIGKSGVMKHLLDLLDEGNLLAMKDAASAIFNLCLVHENKCRAVKEGAVEVILKKIVDNILVDELLAILALLSSHPRAVEEIGDLGAVPCLLGIIRETAVSERSKENCVAILYTVCYSDRTKWKEIREEEKANGTLSNLAKCGTSRAKRKANGILERLNRSIYLTHTA 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0026 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 154 IPR013083 -
Lal5g0026 461 Gene3D - 169 456 IPR011989 -
Lal5g0026 461 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 16 459 - -
Lal5g0026 461 CDD RING-Ubox_PUB 85 127 IPR045210 -
Lal5g0026 461 SMART arm_5 288 328 IPR000225 GO:0005515
Lal5g0026 461 SMART arm_5 246 287 IPR000225 GO:0005515
Lal5g0026 461 SMART arm_5 368 410 IPR000225 GO:0005515
Lal5g0026 461 SUPERFAMILY ARM repeat 184 451 IPR016024 -
Lal5g0026 461 SUPERFAMILY RING/U-box 74 157 - -
Lal5g0026 461 SMART Ubox_2 84 147 IPR003613 GO:0004842|GO:0016567
Lal5g0026 461 ProSiteProfiles U-box domain profile. 80 154 IPR003613 GO:0004842|GO:0016567
Lal5g0026 461 PANTHER U BOX DOMAIN-CONTAINING 16 459 - -
Lal5g0026 461 Pfam U-box domain 81 152 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0026 Lal-Chr5 356093 358030 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0026 143 461 U-box Gene Family AT3G07360 59.394 5.48e-123 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0026 - - gmx:100806619 601.282