Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1663 ATGCGAACTTCATGGGCTGATTTGGCTGCAAATTCTGCAGCTGATAATGCTTCTTATGCTAACAATGCCGGATCAGGTAACAACACTTCAGCTCCTCCTTCCAGACCAGCTTATGTCCCTCCACATCTGAGGAACCGTCCGCCTCCAACAGCTGAATCCCCTGCTCCTCCTCCTCCTGCACATAGCGGCCCTGCTTCTGGTACTGGTACTGGTACTGGTAGGTGGTCTGCGCCGAGAAATGAATACCGTTCTGGGACTGGTGGCAGTGGTCACACAGGTGGATGGGGGAACAAAAGTGGCGGATGGGATCGTGGCAGGGATCGTGAAGTCAACCCCTTTGCGGACCAGGATGATTCTGAACCGACATTCACTGATCAGGAGAATACCGGAATAAACTTTGATGCATATGAAGACATTCCGGTTGAAACCACTGGTGAAAATGTTCCTCCTCCTGTGAACACGTTTGCAGAGATTGACTTGGGCGAAGCGCTCAACGAGAATATAAGAAGGTGCAAATATGTGAGGCCAACACCTGTTCAACGTAATGCCATACCGATATCCCTTGCAGGACGGGATTTGATGGCTTGTGCCCAGACTGGTTCTGGAAAGACTGCTGCCTTTTGTTTCCCAATCATCAGTGGGATTATAAGGGGCCAGCCCATCCAGAGACCACCTCGCGGTGTGCGTACTGTGTACCCACTTGCCCTTGTTCTCTCACCAACTAGGGAGCTGTCAATACAAATACATGAAGAGGCTAAAAAGTTTTCATACCAAACCGGGGTTAGGGTGGTTGTTGCTTATGGTGGAGCTCCAATAAACCAGCAGCTACGGGATCTGGAGAGAGGGGTGGACATTCTTGTAGCAACTCCAGGTAGACTGGTAGATTTGCTGGAGAGGGCTAGAGTTTCACTACAGATGATCAGATATCTAGCCTTAGATGAGGCAGATAGGATGCTGGATATGGGTTTTGAGCCCCAGATAAGGAAAATTGTGGAACAGATGGACATGCCCCCACCAGGTGTTAGACAGACTATGCTGTTCAGTGCCACATTTCCAAGAGAAATACAGAGATTGGCATCTGATTTCCTTTCAAACTATATTTTTTTGGCTGTTGGAAGAGTGGGCTCGAGTACTGAGTTAATTGATCAGAGAGTTGAGTATGTTCAGGAGTCTGACAAGAGAAGTCATCTCATGGACCTTCTGCATGCACAGAGGGAAAATGGCGTCCAAGGAAAGCAAGCTTTAACTTTAGTCTTTGTGGAGACAAAGAAGGGAGCTGATGCACTGGAGCACTGGTTGTATCTAAACGGTTTTCCAGCAACCACTATTCATGGTGACCGGACACAACAGGAAAGAGAATTCGCGTTGAGGTCATTTAAAAGTGGCAACACCCCTATATTGGTCGCCACTGATGTAGCTGCACGTGGTCTTGATATTCCTCATGTTGCCCATGTGGTTAACTTTGATCTTCCCAATGATATTGATGATTATGTGCATCGTATTGGAAGGACAGGTCGAGCAGGAAAGAAGGGTCTCGCCACTGCTTTCTTTAATGACAACAATGCAAACCTAGCGAGGTCTTTGGCAGATCTGATGCAAGAAGCAAATCAAGAAGTGCCTGTTTGGCTTTCACGTTATGCTGCTCGGTCTTCCTTTGGTGGTGGAAGGAACCGTCGATCAGGAGGAGGAGACCGTTTTGGAGGCCGTGACTTTCGAAGAGAAGGTTCTTTCAGCAGGGGTGGTGGTTCTGATTATCATAGTGCTGGAAACAGTGGTGGTGGATATGGGGCATCTGGTGGTTACACAGGAGGATATGGTGGTTCTGGGGTAACTAGTGCATGGGACTGA 1848 0.4832 MRTSWADLAANSAADNASYANNAGSGNNTSAPPSRPAYVPPHLRNRPPPTAESPAPPPPAHSGPASGTGTGTGRWSAPRNEYRSGTGGSGHTGGWGNKSGGWDRGRDREVNPFADQDDSEPTFTDQENTGINFDAYEDIPVETTGENVPPPVNTFAEIDLGEALNENIRRCKYVRPTPVQRNAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIIRGQPIQRPPRGVRTVYPLALVLSPTRELSIQIHEEAKKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTELIDQRVEYVQESDKRSHLMDLLHAQRENGVQGKQALTLVFVETKKGADALEHWLYLNGFPATTIHGDRTQQEREFALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNANLARSLADLMQEANQEVPVWLSRYAARSSFGGGRNRRSGGGDRFGGRDFRREGSFSRGGGSDYHSAGNSGGGYGASGGYTGGYGGSGVTSAWD 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1663 615 MobiDBLite consensus disorder prediction 101 115 - -
Lal4g1663 615 Pfam DEAD/DEAH box helicase 177 358 IPR011545 GO:0003676|GO:0005524
Lal4g1663 615 Gene3D - 109 371 IPR027417 -
Lal4g1663 615 Pfam Helicase conserved C-terminal domain 393 508 IPR001650 -
Lal4g1663 615 Gene3D - 372 551 IPR027417 -
Lal4g1663 615 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED 48 582 - -
Lal4g1663 615 SMART ultradead3 172 384 IPR014001 -
Lal4g1663 615 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 48 582 - -
Lal4g1663 615 CDD DEADc_DDX3_DDX4 154 375 IPR044763 GO:0003724|GO:0005524
Lal4g1663 615 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 234 524 IPR027417 -
Lal4g1663 615 SMART helicmild6 427 508 IPR001650 -
Lal4g1663 615 MobiDBLite consensus disorder prediction 1 33 - -
Lal4g1663 615 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 380 547 IPR001650 -
Lal4g1663 615 MobiDBLite consensus disorder prediction 562 579 - -
Lal4g1663 615 MobiDBLite consensus disorder prediction 551 593 - -
Lal4g1663 615 MobiDBLite consensus disorder prediction 1 128 - -
Lal4g1663 615 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 153 181 IPR014014 GO:0003724
Lal4g1663 615 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 184 369 IPR014001 -
Lal4g1663 615 MobiDBLite consensus disorder prediction 34 63 - -
Lal4g1663 615 CDD SF2_C_DEAD 381 517 - -
Lal4g1663 615 MobiDBLite consensus disorder prediction 65 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1663 Lal-Chr4 20671481 20677535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1663 151 541 Eukaryotic Initiation Factors Gene Family AT3G19760 31.888 1.78e-63 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1663 K11594 - gmx:100795756 915.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1663 4 20671481 20677535 Lal17g1687 17 18041147 18045829 LSH