Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1653 ATGACGAATATGCCAACTGTGGGTTTGGAGTTGAAGATTGATGATCTTTATGAAGAAGCTAAGAGAAGATGGTTGAAACCAATAGAAGTACTTTACATTTTGCAGAATCATCATTCAATCAACTTCACCAACCATCCTCCTCAACTCCCACCCAGTGGATCCCTTTTTCTATTTAATAGAAGAGTGCTGCGTTTCTTCCGTAGAGATGGTTATAACTGGCGTAAGAAAAAAGATGGCACAACTGTGGGTGAAGCTCATGAACGCCTTAAGGTTGCAAATGTTGAAATCCTGAATTGCTATTATGCACATGGAGAGGACAATCCTACTTTCCACAGACGCTCCTACTGGATCTTGGATCCGGCATATGACCATATTGTTCTCGTCCATTATAGACAAACAACTCAGGACAAATCCAGTTCTGGACCTGTCATGCAATCAACAACTTCCTCTCCTGTGTTTAGGCAGAGTCAAAGTTCATACACTTCTCACAACCTGGAGATTGTTGATTCATGTGAACCTAATCACAATTTCTCAAGTCCTGCCTCTGTAGAAGTTTCCTCTGATCTATTCATCACCAGCAATGGAATGGATCACTTGGGTGGGACAGATGCACAAGCCTTGCGCCAATTGGAGAAGCAGTTAAGTTTGAATGACAACAGATTTGAAGAAATTGCACATCATTTAAACCCTCACCAAGATCAATCAACAGCTTTCTCTGGACCAGATGATCCTGAACAACCTTATGACGGATATAATGGAAAACAAGACGGGAGTGGTAAATATTATCATGAATTACTTGACCATGATTCGCCTCATGAAAACGAAAAAGCTCTATCTTGGATGGAGGTACTGGAATCATGTAATCCCTCACCCGAGACGAAGTTACCAGAGCAACATGCATATGATGCATCTAATGGGAAGTCACTATCTTCTTTGGGAAGGGTGCTGATTACCAACCAGGAAAACGGTCACTGTCTAAATTCCAACACTGCCTTCTCAGTTCCTCAACGAGTTGGTGGAGTCAAATTTCATACATATTCTTTGGCAGAAACTCAAGGCACTAATTCTGACTCTTGTCCTACATTCTTTGGCCAAATACAAATTGAAGAACCTCTTGGTGAAGATTCAAGCTTGACTGTAGCACAGAAACAGAAATTCACAATTAGGGCAGTCTCCCCAGAATGGTGTTATGCCATGGAGACTCCGCAGGTCATCATTATTGGATCATTTCTCTGTCTCCCTGATGATTCTACCTGGGCTTGTATGTTTGGTGATATTGAAGTTCATGCTGAGATAATTCAGGATGGTGTAATCAGTTGTGAAGCTCCATCCCACCTTCCTGGAAAGGTCACTCTATGTGTTACTTCAGGAAATCGGGAGATCTGCAGTGAAGTCAGAGAGTTTGAGTTTCGTGATAAGACCAATAATTGCACTCACTGTAATTCATTGGAAAAAGAAGTCAGTAGGAGTGCAGAAGATTTGTTATTGCTTGTTGGATTTGCACAGATGCTCCTTTCTGCTTCAACTCTAAAGAATGACAACCTAGAGTCCGGAAGTCTTCTTCCAACGAAACAGAAAATAGGTGATGATTTGTGGAGCCATATTATAGAGGTTCTTCCAGTTGACAGTGGAACTTCATCTGGTATTGTTGATTGGCTTCTTGAAGAGCTCCTGAAGGATAAGTTGCAGCTATGGCTTTCTTGCAGATCCAAGGAAAGAGATGAAGGGACAGGCTGCTCTTTGTCCAAGAGAGAGCAGGGGATTCTACACATGGTTGCTGGGTTGGGTTATGAGTGGGCCTTGAACCCTATTCTCAGTTGCGGCATGAATATTAATTTCCGTGACATCAATGGGTGGACAGCCCTTCATTGGGCTGCACGGTTTGGAAGGGAAAAAATGGTTGCTTCACTTATAGCGTCTGGTGCATTTGCTGGAGCAGTGACAGATCCGACTTCAGAAGATCCAGCCGGTAAAACTGCTGCATCTATTGCAGCCAGTAATGGCCATGATGGACTGGCAGGTTATCTTTCAGAGGTAGATCTAAGGAGCCATCTTTCATCCCTCACACTGAAAGAGAGTGGGATTTATAAACGTCCTGCTGAGCTTGAAGCAGAGTTAACTTTTAGTGGTGTCTCTAATGAAACTGTTGCAGCCAGTGAGGATCAGGTTTCACTGAAAGATACATTGGCTGCTGCCAGAAATGCAACTCAGGCAGCTGCGCGGATACAGGCCGCTTTTCGTGCTCATTCTTTCCGAAAGCGCAGAGAAAGAGAAGCTGCTGCTTTTGCCGCTGCTTTTGATGGATATGATATCGTTGATTGTAGCATCGATAACATTCCAGTGCTTTCCAACGTATCAAAACTTAGCTTCCGGAGCTCAAGTCGTTATAATTCAGCTGCCTTGTCAATTCAGAAGAAATATCGAGGCTGGAAAGGTCGCAAAGATTTCCTAACATTGCGCCAAAAAGTAGTAAAGATACAGGCTCATGTCAGGGGCCATCAAGTTCGGAAGCATTACAAGCTAATAATATGGGCAGTTGGAGTATTGGACAAGGTAGTGCTACGGTGGCGGAGAAAAGGGACTGGTTTGGGAGGCTTCCGACAAGAAATAGAGTCAATTGATGGAAGTGATGATGAAGATTTTCTCAAGGTGTTCCGAAAAAAGAACGTACATGTAGCCATTGAAATGGCTGTTTCACGGGTGCTATCCATGGTCCATTCTACAAAGGCTCGTCAGCAATATCATCACATGCTTGAGATGTATCGTCAAGCTAAGGCTGAACTTGCCAGCAGCAGTGAAGAAGCATTGTTATCAACATCTTCAGGGGATGCTTCCAATATAGAAGATGATTTTTTGGATCAAATTCCTTGGTAG 2874 0.4318 MTNMPTVGLELKIDDLYEEAKRRWLKPIEVLYILQNHHSINFTNHPPQLPPSGSLFLFNRRVLRFFRRDGYNWRKKKDGTTVGEAHERLKVANVEILNCYYAHGEDNPTFHRRSYWILDPAYDHIVLVHYRQTTQDKSSSGPVMQSTTSSPVFRQSQSSYTSHNLEIVDSCEPNHNFSSPASVEVSSDLFITSNGMDHLGGTDAQALRQLEKQLSLNDNRFEEIAHHLNPHQDQSTAFSGPDDPEQPYDGYNGKQDGSGKYYHELLDHDSPHENEKALSWMEVLESCNPSPETKLPEQHAYDASNGKSLSSLGRVLITNQENGHCLNSNTAFSVPQRVGGVKFHTYSLAETQGTNSDSCPTFFGQIQIEEPLGEDSSLTVAQKQKFTIRAVSPEWCYAMETPQVIIIGSFLCLPDDSTWACMFGDIEVHAEIIQDGVISCEAPSHLPGKVTLCVTSGNREICSEVREFEFRDKTNNCTHCNSLEKEVSRSAEDLLLLVGFAQMLLSASTLKNDNLESGSLLPTKQKIGDDLWSHIIEVLPVDSGTSSGIVDWLLEELLKDKLQLWLSCRSKERDEGTGCSLSKREQGILHMVAGLGYEWALNPILSCGMNINFRDINGWTALHWAARFGREKMVASLIASGAFAGAVTDPTSEDPAGKTAASIAASNGHDGLAGYLSEVDLRSHLSSLTLKESGIYKRPAELEAELTFSGVSNETVAASEDQVSLKDTLAAARNATQAAARIQAAFRAHSFRKRREREAAAFAAAFDGYDIVDCSIDNIPVLSNVSKLSFRSSSRYNSAALSIQKKYRGWKGRKDFLTLRQKVVKIQAHVRGHQVRKHYKLIIWAVGVLDKVVLRWRRKGTGLGGFRQEIESIDGSDDEDFLKVFRKKNVHVAIEMAVSRVLSMVHSTKARQQYHHMLEMYRQAKAELASSSEEALLSTSSGDASNIEDDFLDQIPW 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1653 957 ProSiteProfiles IQ motif profile. 819 843 IPR000048 GO:0005515
Lal4g1653 957 Pfam IPT/TIG domain 387 463 IPR002909 -
Lal4g1653 957 PANTHER CALMODULIN-BINDING PROTEIN 9 954 - -
Lal4g1653 957 Pfam Ankyrin repeats (3 copies) 589 677 IPR002110 GO:0005515
Lal4g1653 957 Gene3D Immunoglobulins 381 475 IPR013783 -
Lal4g1653 957 ProSiteProfiles Ankyrin repeat profile. 617 649 IPR002110 GO:0005515
Lal4g1653 957 Gene3D - 793 843 - -
Lal4g1653 957 Gene3D - 541 682 IPR036770 -
Lal4g1653 957 MobiDBLite consensus disorder prediction 136 155 - -
Lal4g1653 957 SMART iq_5 795 817 IPR000048 GO:0005515
Lal4g1653 957 SMART iq_5 818 840 IPR000048 GO:0005515
Lal4g1653 957 SMART iq_5 734 756 IPR000048 GO:0005515
Lal4g1653 957 SMART CG_1_2 16 134 IPR005559 GO:0003677
Lal4g1653 957 MobiDBLite consensus disorder prediction 228 255 - -
Lal4g1653 957 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 788 847 IPR027417 -
Lal4g1653 957 ProSiteProfiles Ankyrin repeat region circular profile. 617 642 - -
Lal4g1653 957 ProSiteProfiles IQ motif profile. 735 764 IPR000048 GO:0005515
Lal4g1653 957 SUPERFAMILY Ankyrin repeat 586 678 IPR036770 -
Lal4g1653 957 ProSiteProfiles IQ motif profile. 796 825 IPR000048 GO:0005515
Lal4g1653 957 ProSiteProfiles CG-1 DNA-binding domain profile. 13 139 IPR005559 GO:0003677
Lal4g1653 957 Pfam IQ calmodulin-binding motif 798 816 IPR000048 GO:0005515
Lal4g1653 957 Pfam IQ calmodulin-binding motif 821 840 IPR000048 GO:0005515
Lal4g1653 957 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 9 954 - -
Lal4g1653 957 Pfam CG-1 domain 19 132 IPR005559 GO:0003677
Lal4g1653 957 SUPERFAMILY E set domains 387 471 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1653 Lal-Chr4 20584098 20597025 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1653 9 956 CAMTA Transcription Factor Family AT1G67310 49.454 0.0 836
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Lal4g1653 CG-1 1.3e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1653 K21596 - gmx:100791430 1159.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1653 4 20584098 20597025 Lal7g0628 7 13265103 13273278 PCT
Lal7g0628 7 13265103 13273278 Lal4g1653 4 20584098 20597025 PCT