Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1640 ATGGACAATAGTTGTTTCCCCTCTCCTAGGCGTGATGTTTTTCCTTCAGGTCTGCGAGTTCTGGTTGTGGATGATGATCCAACATGGCTCAAGATCCTTCAAAAGATGCTCAATAAGTGCTCTTATGAAGTGACTACATGTTGTTTGGCAAGACATGCTTTAAACTTGCTTCGTGAAAGGAAAGATGGATATGATATAGTGATAAGTGATGTTAACATGCCTGACATGGATGGTTTCAAACTTCTTGAGCATGTTGGACTTGAGATGGATCTTCCTGTCATTATGATGTCGGTGGACGGAGAAACAAGCAGGGTGATGAAAGGTGTTCAACATGGAGCATGTGATTATCTCCTTAAGCCTATAAGGATGAAGGAACTTAGAAATATATGGCAGCATGTTTTTAGAAAAAGGATACATGAGGCAAGAGAATTTGAAAGTTTTGAGAGTTTTGAGAGCATTCAGTTAATGAGAAATGGATTAATAGATCAGTTTGATGAAGGGAACCTGTTTGCTCTGGAAGATATGACTTCAACAAAGAAAAGAAAAGATACAGATAACAGAGACTTTGGAGATTCGTCTTCCGAAAAGAAAGCTAGAGTTCTTTGGTCTGTAGAACTTCATCAGAAGTTTGTTAAAGCAGTGAACCAGATTGGATTTGATAAAGTTGGTCCCAAGAAAATACTAGACTTGATGAATGTTCCATGGCTGACTAGAGAAAATGTTGCTAGCCACTTGCAGAAATACCGGCTTTACTTGAGTAGGTTGCAGAAAGGAAATGAACACAAATCTTCCTCGAGTGGAATAAAGCATTCAGATATGTCCTCAAAAGATATTGCAAGTTTTGGTTTTCATACTCAGAACTCAATAAACATGCAACAAAATGATGTTGCAATTGACAGCTACACTTATTCAGATGGAGCTTTACAACAACTTCAGACAACGGAAACTAAAAGTGATGAAGCCGATTTCAAGGGACTTGTTTCACAATTCGCTATGACAGAAAATGGACGAGCTTTGAGTACTGATAACAATACTGTTGCAAAGATGAGAAAGAGTTTCCTCAATCAAACTCTTGCCCCTATTGAGTCAGAAGGAAACCATGCAGTGTTTGATTGCACCATGCCAAAACAGTACTCTTGGAGGGAAGTTCCAAATATACAACTCAATGAAGAACACAAATCACCATTACATAGTAAGAAGCATCATATTCAAGTCCACCAATCACAACCACAATCAATTGCTTCAATTAGTTCCACTCCCTCTATCACTGAGGGAGAGGTTGCTGCATGTATAGAAACAAAACCTTTCTGTGCTGATTACAAGAGTGATTACAACAGCAGTTCTGTGAGTTCAATTGGGTCTACTGAAGTTGACATCTTTCCTATTCAGCCAGGAAGCCTTATAACTTCAGAACCGCTTTCCGCTACAAAGTTGGGCTTCAAAACACTAGGGTCTAATATCAGTTCCATTTATGATATGGAGTTTTACCAAAGAAACCTAGTTTTGGGAGGTTCTGCACCTTTGAAGGAAGACTTGCATTTAAGTTGGCAACAAGGTGAATGCTATAATATGAACTTTGGTTTTGATCTTCAGAATATAGGGATGTGTGAGTATTATGATCCAGAGCTTGTTACAGAAGTTCCAACACACTTATATGACTCAGCAGATTACTTAGTAATAGATCAAGGTCTCTTCATAGCATGA 1704 0.3856 MDNSCFPSPRRDVFPSGLRVLVVDDDPTWLKILQKMLNKCSYEVTTCCLARHALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEAREFESFESFESIQLMRNGLIDQFDEGNLFALEDMTSTKKRKDTDNRDFGDSSSEKKARVLWSVELHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKGNEHKSSSSGIKHSDMSSKDIASFGFHTQNSINMQQNDVAIDSYTYSDGALQQLQTTETKSDEADFKGLVSQFAMTENGRALSTDNNTVAKMRKSFLNQTLAPIESEGNHAVFDCTMPKQYSWREVPNIQLNEEHKSPLHSKKHHIQVHQSQPQSIASISSTPSITEGEVAACIETKPFCADYKSDYNSSSVSSIGSTEVDIFPIQPGSLITSEPLSATKLGFKTLGSNISSIYDMEFYQRNLVLGGSAPLKEDLHLSWQQGECYNMNFGFDLQNIGMCEYYDPELVTEVPTHLYDSADYLVIDQGLFIA 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1640 567 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 541 - -
Lal4g1640 567 SMART REC_2 18 130 IPR001789 GO:0000160
Lal4g1640 567 SUPERFAMILY Homeodomain-like 196 254 IPR009057 -
Lal4g1640 567 CDD REC_typeB_ARR-like 20 134 - -
Lal4g1640 567 Pfam Myb-like DNA-binding domain 201 249 IPR001005 -
Lal4g1640 567 Gene3D - 18 183 - -
Lal4g1640 567 Pfam Response regulator receiver domain 20 129 IPR001789 GO:0000160
Lal4g1640 567 Gene3D - 193 256 - -
Lal4g1640 567 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Lal4g1640 567 SUPERFAMILY CheY-like 16 149 IPR011006 -
Lal4g1640 567 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 541 IPR045279 GO:0009736
Lal4g1640 567 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 197 250 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1640 Lal-Chr4 20502573 20505524 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1640 12 255 Response Regulator Gene Family AT2G25180 56.972 4.52e-82 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lal4g1640 Response_reg 1.7e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1640 - K14491 gmx:100797421 770.77