Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1638 ATGGAATGCTGTATATTCTCTAAGCTCAAAACCCAACCTTTATGGCTCCTCTTCCTCTTCTCCCTCGGTTCCATCACCCTCCTTCGCTTCTTCTTCCTTTTCCTCAAATGGGTCTACGTCAATTTTCTCAGACCTTCCAAAAACCTTAAAAAGTACGGATCTTGGGCCCTCATCACCGGCCCCACCGACGGCATCGGCAAAGGTTTCGCCTTTCAGCTCGCCCGGAAAGGACTCAACCTCGTACTTGTCGGCCGCAGCCCGGAGAAGCTGAAGGTTGTTTCCGATTCAATCGCCGCCAAGTTCGGGAAAGTTAAGGTTGTCACGGTTGTTGTCGATTTCTCCGGTGATCTAGATTCTGTGATGGAGAAGATTAGAGAAGCGATTGAAGGGCTTGATGTTGGGGTATTGGTGAACAATGTTGGGGTTTCTTACCCTTATGCTAGATTCTTTCATGAGGTGGATGATGAGATTTTGAGGAATTTGATTAAGGTGAATATTGAAGGGACTACTAAGGTTACTCAAGTTGTGTTGCCTGGTATGATTAAGAGGAAGAAGGGTGCTATTGTTAATATTGGTTCTGGTGCTGCTATTGTTATTCCTTCTGATCCTCTTTATGCTGTTTATGCTGCATCTAAAGCGTATGTCGATCAATTTTCTAGATGTCTCTATGTGGAATACAAGAAAACTGGGATTGACGTGCAGTGTCAGGTTCCGTTATACGTGGCAACAAAAATGGCATCAATAAAGAGATCATCATTCTTTGTCCCATCAACCGATGGGTATGCCAAAGCAGGTGTGAGATGGATAGGATATGAACCTCGTTGCACACCATACTGGCCTCATACCCTTCTCTGGGCCTTGGCATACTCACTGCCAGAGTCTGTTGTCGATGCTTGGCGCCTGCGATTTTGCCTTGGTATTCGGAAGAGGGGACAGCTCAAGGATTCAAGGAAGAAGGAATGA 963 0.459 MECCIFSKLKTQPLWLLFLFSLGSITLLRFFFLFLKWVYVNFLRPSKNLKKYGSWALITGPTDGIGKGFAFQLARKGLNLVLVGRSPEKLKVVSDSIAAKFGKVKVVTVVVDFSGDLDSVMEKIREAIEGLDVGVLVNNVGVSYPYARFFHEVDDEILRNLIKVNIEGTTKVTQVVLPGMIKRKKGAIVNIGSGAAIVIPSDPLYAVYAASKAYVDQFSRCLYVEYKKTGIDVQCQVPLYVATKMASIKRSSFFVPSTDGYAKAGVRWIGYEPRCTPYWPHTLLWALAYSLPESVVDAWRLRFCLGIRKRGQLKDSRKKE 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1638 320 PANTHER BETA-KETOACYL REDUCTASE 1-RELATED 5 319 - -
Lal4g1638 320 Gene3D - 48 266 - -
Lal4g1638 320 PIRSF 11-beta-HSD1 5 314 - -
Lal4g1638 320 Pfam short chain dehydrogenase 55 247 IPR002347 -
Lal4g1638 320 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 53 311 IPR036291 -
Lal4g1638 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 142 IPR002347 -
Lal4g1638 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 186 194 IPR002347 -
Lal4g1638 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 208 227 IPR002347 -
Lal4g1638 320 PANTHER RH59310P 5 319 - -
Lal4g1638 320 CDD 17beta-HSD1_like_SDR_c 53 295 - -
Lal4g1638 320 PRINTS Glucose/ribitol dehydrogenase family signature 55 72 IPR002347 -
Lal4g1638 320 PRINTS Glucose/ribitol dehydrogenase family signature 131 142 IPR002347 -
Lal4g1638 320 PRINTS Glucose/ribitol dehydrogenase family signature 180 196 IPR002347 -
Lal4g1638 320 PRINTS Glucose/ribitol dehydrogenase family signature 208 227 IPR002347 -
Lal4g1638 320 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1638 Lal-Chr4 20489672 20492607 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1638 1 320 Lipid Metabolism Gene Families AT1G67730 64.688 3.09e-165 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1638 K10251 - jre:108990665 547.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1260 14 14391425 14395353 Lal4g1638 4 20489672 20492607 PCT
Lal7g0728 7 14198689 14203070 Lal4g1638 4 20489672 20492607 PCT