Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1634 ATGGCAATTCCACTCTCATTTATGTCACTCTTCTTTCTATTTCTTTTACCTTCCTTCATTTCCTCTTCCCCACTTCAAGATCCTGAATTAGTAGTCCAAGAAGTACACAAGAGCATTAATGTGTCTAGGAGAAACTTAGCATTTCTTTCATGTGTGACTGGTAACCCTATTGATGATTGTTGGAGGTGTGATACAAACTGGGAAAAAAACAGGAAGAGGCTAGCAGATTGTGCCATTGGATTTGGTAAACATGCTATTGGTGGCAGAGATGGTAAAATATATGTAGTTACTGACCCTAGTGATCACCCTGTGAATCCAAAGCCAGGTACTCTAAGATATGGTGTCATACAAGAAGAGCCATTGTGGATCATATTCAAGCATGACATGGTAATCAAGCTCAAAGAAGAGCTTATGATGAATTCTTTTAAAACTATTGATGGTAGAGGTGTTAATGTGCACATTGCTGGTGGACCTTGTATTACTATACAATATGTGACTAATATTATTATCCATGGTATTAATATTCATGATTGTAAACAAGGAGGGAATGCATATGTGAGGGACTCAACTACACATTATGGTTGGAGGACTCTTTCTGATGGTGATGGAGTTTCAATCTTTGGTGGAAGTCATGTTTGGGTGGATCATTGTTCTTTGTCTAATTGTCGCGACGGCTTAATCGATGCTATTCATGGATCTACAGCCATTACCATTTCTAATAATTACATGACACACCATAACAAGGTCATGCTTTTGGGTCATAGTGATAGTTACACTAAAGATAAGAATATGCAAGTCACCATTGCTTTTAACCATTTTGGAGAAGGACTAGTGCAGAGAATGCCAAGGTGCAGGCATGGATACTTCCATGTGGTGAACAATGACTACACACATTGGAGAATGTATGCCATAGGAGGAAGTGCTGCTCCAACTATCAATAGCCAAGGCAATAGATTTCTTGCTCCTGATGACAATACCTTCAAACAGGTGACAAAGAGAGAGAATACAGCAGAGAGCAAATGGATAAAGTGGAATTGGAGATCAAGGGGAGATTTGTTGTTAAATGGTGCATTTTTCACACCATCAGGAGTAGCTGCATCTTCAAGCTATGCAAGGGCTTCAAGTTTATCAGCAAAACCATCTTCATTGGTCTCTTCCATCACTGCATCAGCTGGATATCTTAACTGCAGAAAGGGCTCACGCTGCTGA 1209 0.397 MAIPLSFMSLFFLFLLPSFISSSPLQDPELVVQEVHKSINVSRRNLAFLSCVTGNPIDDCWRCDTNWEKNRKRLADCAIGFGKHAIGGRDGKIYVVTDPSDHPVNPKPGTLRYGVIQEEPLWIIFKHDMVIKLKEELMMNSFKTIDGRGVNVHIAGGPCITIQYVTNIIIHGINIHDCKQGGNAYVRDSTTHYGWRTLSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDSYTKDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWRMYAIGGSAAPTINSQGNRFLAPDDNTFKQVTKRENTAESKWIKWNWRSRGDLLLNGAFFTPSGVAASSSYARASSLSAKPSSLVSSITASAGYLNCRKGSRC 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1634 402 SMART amb_all 128 325 IPR002022 -
Lal4g1634 402 PANTHER PECTATE LYASE 18-RELATED 6 399 IPR045032 GO:0030570
Lal4g1634 402 PRINTS Pollen allergen Amb family signature 77 94 IPR018082 -
Lal4g1634 402 PRINTS Pollen allergen Amb family signature 100 125 IPR018082 -
Lal4g1634 402 PRINTS Pollen allergen Amb family signature 136 152 IPR018082 -
Lal4g1634 402 PRINTS Pollen allergen Amb family signature 200 221 IPR018082 -
Lal4g1634 402 PRINTS Pollen allergen Amb family signature 280 299 IPR018082 -
Lal4g1634 402 PRINTS Pollen allergen Amb family signature 302 321 IPR018082 -
Lal4g1634 402 PRINTS Pollen allergen Amb family signature 344 368 IPR018082 -
Lal4g1634 402 PRINTS Pollen allergen Amb family signature 373 396 IPR018082 -
Lal4g1634 402 Pfam Pectate lyase 134 319 IPR002022 -
Lal4g1634 402 PANTHER PECTATE LYASE 6 399 - -
Lal4g1634 402 SUPERFAMILY Pectin lyase-like 40 397 IPR011050 -
Lal4g1634 402 Gene3D - 54 395 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1634 Lal-Chr4 20468327 20470485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1634 5 402 Polysaccharide Lyase AT5G63180 77.228 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1634 K01728 - gmx:100816256 735.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1634 4 20468327 20470485 Lal17g1651 17 17790375 17793827 LSH