Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1616 ATGTGTGGAATTCTAGCAGTGTTGGGTTGTGTTGATAATTCTCAAGCAAAACGATCCCGTATCATCGAATTATCTCGCAGGTTAAGGCATAGAGGTCCAGATTGGAGTGGGTTGCATTGTCATGAAGATTGTTATCTTGCTCATCAAAGGCTTGCTATTATTGATCCTACTTCAGGGGATCAACCTCTTTACAATGAAGACAAGACTGTTATTCTCACTGTAAATGGGGAGATATATAACCATAAGCAGTTGAGGCAGAACCTGAGTTCCCATCAATTTCGAACTGGCAGTGACTGTGAAGTGATTACTCATCTCTATGAAGAACACGGAGAAGACTTTATTGATATGCTGGATGGGATGTTCTCCTTTGTCCTTCTTGACACTCGAGATAAAAGTTTTATTGCTGCTCGCGACGCTATTGGCATTACCCCTCTTTACTTGGGTTGGGGCCTTGATGGATCAATATGGTTTGCATCTGAAATGAAAGCTTTGAGTGATGATTGTGAGAGATTCATATCTTTTCCTCCGGGGCATATATATTCCAGCAAACATGGAGGATTAAGAAGGTGGTACAATCCACCATGGTTCTCAGAGCAGATTCCTTCATCACCTTATGATCCAATGATTTTACGTGAGACCTTTGAGAAGGAAACTGAAACCATTAAATTTCGTCGGGCAACAGCTCAAGTGGAAGAAGCTTGCACAAAGTTTAGAGAAAAACCATGTTTATCTGTTGAATCCGATGCTCAAGTACCAAATATGGAGTTGCAAGATCTTAATTGTGGAAGATGTATGGCTGTAGTTAAGAGACTAATGACTGATGTGCCTTTTGGAGTTCTATTGTCTGGAGGACTGGACTCATCACTTGTTGCTGCCGTGGCCAATCGTTATTTGGCTGATTCTGCAATTGCTCAACAGTGGGGATCACAATTACACACTTTCTGTATTGGTTTAAAGGGCTCTCCGGATTTGAAAGCTGCCAAAGAGGTAGCAGATTATCTTGGTACTCGTCACCATGAACTTCATTTCACGGTTCAGGAAGGTATAGATGCGCTTGAAGAAGTCATTTATCATATTGAAACATATGATGTAACGACCATCAGAGCAAGTACTCCAATGTTTCTTATGTCCAGAAAAATCAAATCCTTGGGAGTGAAAATGGTCCTTTCCGGGGAAGGATCGGATGAAATATTTGGAGGTTACCTGTATTTTCATAAGGCACCTAACAAGGAAGAGTTTCATGAAGAAACATGTCGAAAAATTAAGGCTCTTCATCTTTATGATTGCCTGAGAGCCAATAAATCAACTTCAGCATGGGGTATAGAGGCGCGTGTACCATTCTTGGATAAAGAATTTATCAACACAGCCATGAGTATGGATCCGGAGTGGAAAATGATAAGATCCGATCTTGGAAGGATAGAGAAGTGGGTACTACGCAATGCCTTTGATGATGAGAAGAATCCATATTTACCAAAGCACATATTGTACAGGCAGAAGGAACAGTTCAGTGACGGTGTCGGGTACAGCTGGATTGATGGTTTGAAGGAACATGCGAACAATCAAGTCACAGATGGAATGCTGATGCATGCTAACTATATTTACCCCGAAAACACTCCTACTACAAAAGAGGCATACCATTACAGGACAATTTTCGAGAAGTTCTTCCCAAAGAATGCGGCGAGGTCAACAGTTCCAGGGGGTCCTAGTGTGGCATGCAGCACTGCAAAAGCTGTGGAATGGGATGCAGCATGGTCTAAAAATCCTGACCCTTCTGGTCGTGCCGCTCTTGGTGTTCATGAAGCTGCATATGAGGATACAGTGAATACAGAACTAGTTGAGCCTAAAAATGGATCCCTTTAA 1860 0.4199 MCGILAVLGCVDNSQAKRSRIIELSRRLRHRGPDWSGLHCHEDCYLAHQRLAIIDPTSGDQPLYNEDKTVILTVNGEIYNHKQLRQNLSSHQFRTGSDCEVITHLYEEHGEDFIDMLDGMFSFVLLDTRDKSFIAARDAIGITPLYLGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKHGGLRRWYNPPWFSEQIPSSPYDPMILRETFEKETETIKFRRATAQVEEACTKFREKPCLSVESDAQVPNMELQDLNCGRCMAVVKRLMTDVPFGVLLSGGLDSSLVAAVANRYLADSAIAQQWGSQLHTFCIGLKGSPDLKAAKEVADYLGTRHHELHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYFHKAPNKEEFHEETCRKIKALHLYDCLRANKSTSAWGIEARVPFLDKEFINTAMSMDPEWKMIRSDLGRIEKWVLRNAFDDEKNPYLPKHILYRQKEQFSDGVGYSWIDGLKEHANNQVTDGMLMHANYIYPENTPTTKEAYHYRTIFEKFFPKNAARSTVPGGPSVACSTAKAVEWDAAWSKNPDPSGRAALGVHEAAYEDTVNTELVEPKNGSL 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1616 619 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 2 185 IPR017932 -
Lal4g1616 619 PANTHER ASPARAGINE SYNTHETASE 265 607 - -
Lal4g1616 619 PANTHER ASPARAGINE SYNTHETASE 1 217 - -
Lal4g1616 619 Gene3D HUPs 264 563 IPR014729 -
Lal4g1616 619 PANTHER ASPARAGINE SYNTHETASE [GLUTAMINE-HYDROLYZING] 3 1 217 - -
Lal4g1616 619 PANTHER ASPARAGINE SYNTHETASE [GLUTAMINE-HYDROLYZING] 3 265 607 - -
Lal4g1616 619 Pfam Glutamine amidotransferase domain 48 165 IPR017932 -
Lal4g1616 619 PIRSF Asn_synthetase_glu-h 406 564 IPR006426 GO:0004066|GO:0006529
Lal4g1616 619 PIRSF Asn_synthetase_glu-h 239 410 IPR006426 GO:0004066|GO:0006529
Lal4g1616 619 PIRSF Asn_synthetase_glu-h 1 196 IPR006426 GO:0004066|GO:0006529
Lal4g1616 619 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 1 195 IPR029055 -
Lal4g1616 619 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 266 534 - -
Lal4g1616 619 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 2 192 IPR029055 -
Lal4g1616 619 CDD Asn_Synthase_B_C 266 505 IPR001962 GO:0004066|GO:0006529
Lal4g1616 619 CDD AsnB 2 192 IPR033738 -
Lal4g1616 619 Pfam Asparagine synthase 266 410 IPR001962 GO:0004066|GO:0006529
Lal4g1616 619 TIGRFAM asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 416 IPR006426 GO:0004066|GO:0006529
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1616 Lal-Chr4 20344717 20352059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1616 75 164 PRT Gene Family AT2G16570 37.000 2.78e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1616 K01953 - cit:102618937 1046.57