Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1610 ATGAAAAAAATGGGAGACATTTCACCAGGGAGGAAATCTGGCTGTGGCTTAATATCAGCAGTGTTTAGGAGAAGAACTAGTTGGTCAGGGAAATCAGTCATTGCTGGCTCTTCTCCGATCAGATCCAACAACGGAATCGATTTCGTTAAACCATCGAATACTCACGATTCGAAAAGGCGCAGAGGTGGTTCTGACATTAGTGCTGCCTCAGTTATAACAACTTCATCTAATGCCTCAAAAAATTCATCATCTAGTTATGTTGTCACACAATCCCCTTCATTATCCAACTATCCTCAAATTCCACCACCAACAACAACAACAGCAACACATGTTGTACAACAAAGGAAACACCAATCCAATGAAACAGCAATGGCATTGCATGGTGGTTTTTCAGGAACTAGAGGTGTATCGAAAGCGGCGTCTTCGGCTCAAGGCTATGTAAACCAAGGAAGAAAGGTGCCAAGAGAAGCTGTTGGAATTTCTGGTGAGCTTGAAAGCATGATTGTTGATCATCAAAAAAACAAAGGAAGCAACAACCTTGTTAGAGCTTCTTCTAGCAATGTTATGTTGTATGGTAATTTAGGTAACCTTAGACAAGGTGGACAAAATACTAGTCCTCACAATGCAATGGAAAATCACTATAACATTGGTAATAATACAATGGAGAATGTTGGTTATAAGAGTAAAGAGATTGTTAAACCAAGCAAAGAACAATTAGGTTCATTATGCAGGGCATTGTCTACTAGAATGGATCCAGAACAATTGAAGATAATGGGCAATGAAGATTATAAGAATGGAAGATTTGCAGAGGCTTTGGCTCTTTATGATGCAGCTATTGCAATTGATCCTAATAAGGCTTCTTATAGGAGTAATAGAAGTGCTGCTTTAACTGCTCTTGGTAGACTTTTAGAAGCTGTTTTTGAATGTAGAGAAGCCATTCAAATTGACTCTCATTACCATAGAGCTCATCATAGATTGGGGAATTTGTACTTTAGATTAGGAGAAGTAGATAGTGCCTTGTATCATTATAAACAAGCAGGACCAGAAGCTGATCCTGATGAAGTTGCTAAAGTTAAGAATCTTCAAATCCATTTACATAAGTGCACTGAGGCTCGTAGGTTAGGAGATTGGAACACACTCATCACTCTCACCAACAATGCTATATCATCTGGTGCAGATTCTGCTCCACAAATATTTGCATTGCAAGCTGAAGCATTGTTGAAGCTCCGTAGGCATGAAGATGCAGAAAATGTAATGTCAAAGTGCACAAACATTGATGTTGATGAGGGTACTAAGTTCTTTGGACCTATTGGTAATGCAAATTTGTTGGTTACACGTGCTAAGGTTGATTTGGCTGCTGGCAGATTTGAAGATGCTTTAGAGGAAGCAAATAAAGCAGCTAGGTTGGACTCAAACAATAAGGAGACAAATAAGGTGTTGAGAAAGGCTAGAGCCATTACAACTTCTAGAGCAAAAGGAAATGAACTTTTCAAGGCATCGAAATTCAGTGAGGCATGTGTTGCCTATGGAGAAGGCTTAGAACATGACCCATACAACTCTGTTTTGCTATGTAACCGAGCTGCTTGTAGATCAAAGTTAGGACAATATGAGAAAGCTTTGGAAGATTGCAATGCTGCCCTTAACTTAAGACCATCTTACATCAAGGCTAGGCTAAGAAGGGCTCATTGTAATGCAAAGTTGGAAAGATGGGAAGCTTCAATACAAGACTATGAAATGTTGGTAAAGGAGTCATCAGAAGATGAGGAAATAAACAAAGCCTTGTTGGAGGCCCAAGCCCATCTTATGAAAAGGCAAGGTGGTTCATAG 1827 0.3952 MKKMGDISPGRKSGCGLISAVFRRRTSWSGKSVIAGSSPIRSNNGIDFVKPSNTHDSKRRRGGSDISAASVITTSSNASKNSSSSYVVTQSPSLSNYPQIPPPTTTTATHVVQQRKHQSNETAMALHGGFSGTRGVSKAASSAQGYVNQGRKVPREAVGISGELESMIVDHQKNKGSNNLVRASSSNVMLYGNLGNLRQGGQNTSPHNAMENHYNIGNNTMENVGYKSKEIVKPSKEQLGSLCRALSTRMDPEQLKIMGNEDYKNGRFAEALALYDAAIAIDPNKASYRSNRSAALTALGRLLEAVFECREAIQIDSHYHRAHHRLGNLYFRLGEVDSALYHYKQAGPEADPDEVAKVKNLQIHLHKCTEARRLGDWNTLITLTNNAISSGADSAPQIFALQAEALLKLRRHEDAENVMSKCTNIDVDEGTKFFGPIGNANLLVTRAKVDLAAGRFEDALEEANKAARLDSNNKETNKVLRKARAITTSRAKGNELFKASKFSEACVAYGEGLEHDPYNSVLLCNRAACRSKLGQYEKALEDCNAALNLRPSYIKARLRRAHCNAKLERWEASIQDYEMLVKESSEDEEINKALLEAQAHLMKRQGGS 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1610 608 MobiDBLite consensus disorder prediction 30 109 - -
Lal4g1610 608 SUPERFAMILY TPR-like 252 475 IPR011990 GO:0005515
Lal4g1610 608 Gene3D Tetratricopeptide repeat domain 250 606 IPR011990 GO:0005515
Lal4g1610 608 PANTHER OS01G0616333 PROTEIN 8 605 - -
Lal4g1610 608 ProSiteProfiles TPR repeat profile. 440 473 IPR019734 GO:0005515
Lal4g1610 608 ProSiteProfiles TPR repeat profile. 252 285 IPR019734 GO:0005515
Lal4g1610 608 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 8 605 IPR044534 -
Lal4g1610 608 SMART tpr_5 440 473 IPR019734 GO:0005515
Lal4g1610 608 SMART tpr_5 554 587 IPR019734 GO:0005515
Lal4g1610 608 SMART tpr_5 486 519 IPR019734 GO:0005515
Lal4g1610 608 SMART tpr_5 320 353 IPR019734 GO:0005515
Lal4g1610 608 SMART tpr_5 520 553 IPR019734 GO:0005515
Lal4g1610 608 SMART tpr_5 286 319 IPR019734 GO:0005515
Lal4g1610 608 SMART tpr_5 252 285 IPR019734 GO:0005515
Lal4g1610 608 SMART tpr_5 396 429 IPR019734 GO:0005515
Lal4g1610 608 Pfam Tetratricopeptide repeat 322 352 IPR019734 GO:0005515
Lal4g1610 608 MobiDBLite consensus disorder prediction 30 51 - -
Lal4g1610 608 ProSiteProfiles TPR repeat profile. 520 553 IPR019734 GO:0005515
Lal4g1610 608 Coils Coil 567 587 - -
Lal4g1610 608 MobiDBLite consensus disorder prediction 67 109 - -
Lal4g1610 608 Pfam TPR repeat 259 300 - -
Lal4g1610 608 Pfam Tetratricopeptide repeat 522 553 IPR001440 GO:0005515
Lal4g1610 608 SUPERFAMILY TPR-like 488 598 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1610 Lal-Chr4 20293531 20297343 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1610 253 327 U-box Gene Family AT3G07370 36.000 1.98e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1610 - - lang:109326248 1026.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1610 4 20293531 20297343 Lal17g1623 17 17598626 17603097 LSH