Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1608 ATGACTCAGAAGCAGAATGTGGTAGTGTCTGAAACCAAATCTAAAGTTATGGCACAAAATAAATCACTAGGAGGAGGGTACATTTCCATTACAAGGAGGAGTATTTTGAAGAACCTTGAAATCAATAATGGAAGAGTTAATGGTTGGATTGAATCCATTAGAGCTTCTTCTCCAACCCATTCTTCTTTGTCTCAAAACAAAACCTCTTGGATTCTTCATCATCCATCAGCACTAGACATGTTTGACCAAATTATGGAAGCATCAAAGGGAAAGCAAATAGTGATGTTTCTAGACTATGATGGCACACTATCACCTATAGTGGATGACCCTAACCGTGCTTACATGTCCAATTCGATGAGAAAAACAGTGAGGAAACTTGCAAGATGTTTTCCAACAGCTATTGTAACTGGCAGATGCAAAGACAAGGTGTACAATTTTGTTCGGTTGGCAGAGTTATACTATGCTGGTAGCCATGGCTTGGATATTAAAGGGCCAACTAGAACATCAAAGTACAACAAAGATAGGAAATCAGAGACACTTCTTTTTCAACCTGCCACTTACTTTCTTCCAATGATACATAGGGTGTACCAACAATTAGTTGATAAGACAAAACCAATTCCTGGAGCTATGGTGGAGAATAACAAGTTTTGTGTCTCTGTTCATTTTCGTTGTGTTGATGAAAAGAAATGGAGTGAACTTGCACAACAAGTGAAATCAGTGTTAAAGGACTACCCCAAACTTCGTCTTACCCAAGGAAGAAAGGTGCTAGAGATTCGTCCCACTATTAAATGGGACAAGGGTAAAGCCTTGGAATTTTTGTTGGAGTCACTTGGATTAGCCAACTGCAAAGATGTTTTTCCTGTATATATTGGTGATGATCGAAGTGATGAAGATGCTTTCAAGAAATTAAGAGATAGAGGACAAGGTTTTGGAATTCTTGTTTCGAAATTTCCAAAGGAAACAAGTGCACTTTACTCTTTACAAGAACCCAATGAGGCAAGTGATGGACTTTCTTCAACGTTTGGTGGAGTGGAAAAAAGTATAACTTGGTGCAAGTTCCATGGTGTAAATGTGTATATGAAATGA 1086 0.3831 MTQKQNVVVSETKSKVMAQNKSLGGGYISITRRSILKNLEINNGRVNGWIESIRASSPTHSSLSQNKTSWILHHPSALDMFDQIMEASKGKQIVMFLDYDGTLSPIVDDPNRAYMSNSMRKTVRKLARCFPTAIVTGRCKDKVYNFVRLAELYYAGSHGLDIKGPTRTSKYNKDRKSETLLFQPATYFLPMIHRVYQQLVDKTKPIPGAMVENNKFCVSVHFRCVDEKKWSELAQQVKSVLKDYPKLRLTQGRKVLEIRPTIKWDKGKALEFLLESLGLANCKDVFPVYIGDDRSDEDAFKKLRDRGQGFGILVSKFPKETSALYSLQEPNEASDGLSSTFGGVEKSITWCKFHGVNVYMK 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1608 361 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 95 306 IPR006379 -
Lal4g1608 361 Pfam Trehalose-phosphatase 96 330 IPR003337 GO:0003824|GO:0005992
Lal4g1608 361 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 338 IPR044651 GO:0004805|GO:0005992
Lal4g1608 361 Gene3D - 95 327 IPR023214 -
Lal4g1608 361 Gene3D - 175 261 - -
Lal4g1608 361 SUPERFAMILY HAD-like 94 335 IPR036412 -
Lal4g1608 361 TIGRFAM T6PP: trehalose-phosphatase 91 332 IPR003337 GO:0003824|GO:0005992
Lal4g1608 361 PANTHER TREHALOSE-PHOSPHATE PHOSPHATASE C-RELATED 1 338 - -
Lal4g1608 361 CDD HAD_TPP 94 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1608 Lal-Chr4 20274489 20278435 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1608 82 303 Trehalose Biosynthesis Gene Families AT1G23870 25.541 6.69e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1608 K01087 - gmx:100794430 557.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1608 4 20274489 20278435 Lal21g1283 21 16103889 16108645 LSH
Lal4g1608 4 20274489 20278435 Lal17g1621 17 17578966 17583424 LSH