Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1607 ATGGCACAAGAGTTTTTAGAGCCATGTAGTGAAGAGTTAATGAAAGCAATTGAACCTTTCATGAAAATTGATTCATATAACTCTTCCTTCTCTATTTCTAATTCTACCCCAAACCCTTCATCACTTTGTTCTTCTTTATCCAATTTATATCAAAACGCAAATAATTCCATTAAGCTAAACCAACTCACCCCATCTCAAGTTCTTCAAATTCAAGCTCAAATCCATATCCAACAACAACAAAAACAAAGGCTAATTCAATTGCAAAATAAAAAACAACAACAACCCTTAAGTTTTCTTAGCCCAAAACATGTTCCAATGAAACACATAGGTTCTTCTAATTCAAAACCAACAAAACTATACTGTGGAGTTAGACAAAGGCATTGGGGTAAATGGGTAGCTGAGATTAGACTCCCAAAAAATAGAACACGTCTTTGGCTTGGAACCTTTGATACTGCTGAAGAAGCAGCTTTGGCTTATGATAATGCAGCTTTTAAGCTAAGGGGTGATATTGCAAGGCTTAATTTCCCTCATTTACATCACCATGGTGCTCATGTTAATGCAAAGTTGGAGCTTGATGTGTCACAATCTGACAACGAAGATTATAAGGTTGAGATTATTCCAACGTTGTCACCTATGTCCAATGAATCATCATCACCTCATGGTTCTGCTTCTTCACCTGAATCTGATATTACTTTCTTAGATTTCTCAGAATCTAATGAGATTGATTATTTTGGATTGAATTTGGGGAAGTACCCTTCAGTGGAGATTGATTGGGAAGCTATTTGA 786 0.3588 MAQEFLEPCSEELMKAIEPFMKIDSYNSSFSISNSTPNPSSLCSSLSNLYQNANNSIKLNQLTPSQVLQIQAQIHIQQQQKQRLIQLQNKKQQQPLSFLSPKHVPMKHIGSSNSKPTKLYCGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDNAAFKLRGDIARLNFPHLHHHGAHVNAKLELDVSQSDNEDYKVEIIPTLSPMSNESSSPHGSASSPESDITFLDFSESNEIDYFGLNLGKYPSVEIDWEAI 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1607 261 PRINTS Ethylene responsive element binding protein signature 120 131 IPR001471 GO:0003700|GO:0006355
Lal4g1607 261 PRINTS Ethylene responsive element binding protein signature 142 158 IPR001471 GO:0003700|GO:0006355
Lal4g1607 261 SUPERFAMILY DNA-binding domain 119 177 IPR016177 GO:0003677
Lal4g1607 261 SMART rav1_2 119 182 IPR001471 GO:0003700|GO:0006355
Lal4g1607 261 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF060-LIKE 190 261 - -
Lal4g1607 261 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF060-LIKE 5 187 - -
Lal4g1607 261 Pfam AP2 domain 120 168 IPR001471 GO:0003700|GO:0006355
Lal4g1607 261 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 5 187 - -
Lal4g1607 261 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 190 261 - -
Lal4g1607 261 MobiDBLite consensus disorder prediction 209 229 - -
Lal4g1607 261 CDD AP2 118 178 IPR001471 GO:0003700|GO:0006355
Lal4g1607 261 Gene3D AP2/ERF domain 119 177 IPR036955 GO:0003700|GO:0006355
Lal4g1607 261 ProSiteProfiles AP2/ERF domain profile. 119 176 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1607 Lal-Chr4 20263943 20264869 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1607 11 261 AP2-EREBP Transcription Factor Family AT5G65130 46.350 2.21e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal4g1607 AP2 6.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1607 K09286 - gmx:106796800 220.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1607 4 20263943 20264869 Lal17g1620 17 17562948 17563901 LSH