Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1600 ATGGTGGATCACTCAGATTCTTCTCCTCTCGTTCCTCCCAAACCTATTACTGACCCTTCCGAGATCGATCTCGAAGCTGGTCCCACTGAACAAATTCAATGCCGGATTTGTCTTGAAACTGATGGTAGGGATTTCATAGCCCCTTGTATGTGCAAAGGTACATCTAAATATGTACACCGGGAATGCCTGGATCAATGGCGGGCTGTTAAGGAAGGGTTTGCCTTTGCTCACTGCACTACCTGCAAGGCTCCTTATCATTTGCGTGTTCATGTGGCTGCTGATAGGAAATGGCGTACTTTGAAATTTCGGTTTTTCGTCACCCGGGACATTTTCTTTATTTTTCTGGCTGTTCAGCTAGTCATTTCTTCACTGGCATATTTGGTTTATCTGGTAGATGCTTATCAGCAGTCTTGGCTTCGTATTCTCTGGGGATTTGATAGTGAAATAAGCTTTTACTACATATGTGGAGCTCTATTGTTTTTTGCCTTGCTTGGCCTTTCTGGGTGCTTCATTACCTGTTATGATCGAAGAATTCGCAATGATTTGGCTCAGCCTTGTAGAGAATTATGCCTTTGTTGCTGTCAACCTGGAGTTTGTGCAGACTGTCATTTACCGGGAACTCTTTGCATGTGGACTGATTGCACGGCATGCTTTGAGAGTTGTGGAACCATGGCAACTGAATGTGGTGGTTGTTTGGGAGGCGCCGGGGAAGCAGGGCTACCATTAATGTTCATAATGGCATTGATTGTTCTGGGACTTTTTACTGTAATTGGGATCTTTTACAGCGTATTGGTGGCTACCATGGTAGGACAACGGATATGGCAACGTCACTATCACATACTTGCAAAAAGGATGTTAACAAAGGAGTATGTGGTTGAAGACGTTGATGGAGAGATGACAGGATCTGATTGGTCTCCCCCACCTCTTCCGCAAGAGCATGTTCAGCAGCTGAAAACACTGGGCCTGCTATGA 972 0.4506 MVDHSDSSPLVPPKPITDPSEIDLEAGPTEQIQCRICLETDGRDFIAPCMCKGTSKYVHRECLDQWRAVKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFFVTRDIFFIFLAVQLVISSLAYLVYLVDAYQQSWLRILWGFDSEISFYYICGALLFFALLGLSGCFITCYDRRIRNDLAQPCRELCLCCCQPGVCADCHLPGTLCMWTDCTACFESCGTMATECGGCLGGAGEAGLPLMFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTGSDWSPPPLPQEHVQQLKTLGLL 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1600 323 SMART ringv_2 33 82 IPR011016 GO:0008270
Lal4g1600 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 96 IPR013083 -
Lal4g1600 323 SUPERFAMILY RING/U-box 29 86 - -
Lal4g1600 323 ProSiteProfiles Zinc finger RING-CH-type profile. 26 88 IPR011016 GO:0008270
Lal4g1600 323 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 323 - -
Lal4g1600 323 CDD RING_CH-C4HC3_MARCH 34 82 - -
Lal4g1600 323 MobiDBLite consensus disorder prediction 1 22 - -
Lal4g1600 323 Pfam RING-variant domain 34 81 IPR011016 GO:0008270
Lal4g1600 323 PANTHER BNAA04G12620D PROTEIN 1 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1600 Lal-Chr4 20171007 20175435 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1600 1 323 C3H Transcription Factor Family AT2G22120 84.259 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1600 - - gmx:100791777 637.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1600 4 20171007 20175435 Lal4g1600 4 20171007 20175435 ECH
Lal4g1600 4 20171007 20175435 Lal17g1610 17 17481817 17492263 LSH