Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1560 ATGAAGGATACCGATAAGAAGTTAAATATCAGAGGACCTAGGAAATGCAGTCATTCAAAGGAAAGGACCGAGTTAAAGTTAGACTCATCGTCGAGATTTGATGCGAGTATCACAAAAGGGCGAGTGAAGAAGAATAGGTTGAAATCAAAATCGCATAAACACATAGTCGGCACAAACACATCAAGGATGGAAGTTAACGATTCTTCCATAGAGGGGCCAATCAAGGACTATTCAAATAAAAAATTGATTATTAGACAAAATCTGTGTAAAACTGATGGAAAATCTTCACCGTTGCAGTCTTCAATGACACTACATGGCAAAAAAACTTCTCTTTGTTCTAGAAAAGAGGGGGAAGATATTGATCAGGAGGCAAAGATCCATAAAATGAAGAGAAGGAGAAAGAAGAAAAGGCAAAGGGATAATGTGGATCTTGATGATGCTTTACGCCTGCAGAGGAGAACAAGGAACCTCTTAATAAGAATGAAGCAAGAGCAGAACCTAATTGATGCTTACTCTGGAGAAGGTTGGAAAGGCCAGAGCTTTGTAGCTGATCATTCTTCTTTGTTTTTACGAAAACGTCCGCACAGCCGAGAAAAGATTAGGCCAGAAAAGGAGTTACAAAGAGCAAAGAAGCAGATCTTAAGATGTAAACTTAGTATTCGTGATGCCATTCGCCAGTTGGATTCTCTTAGTTCAGTGGGAAGCATTGAAGGTTCTGTCATTGCTCCAGATGGATCTGTTTATCATGAACATATATTCTGTGCAAATTGCAAGTTGCGTGAGGCATTCCCAGATAATGATATCATACTCTGTGATGGCTCATGCAATCGTGCTTTTCATCAAAGATGCCTCGATCCTCCTTTGGACACTGAAAATATTCCCCCTGAAGACCAAGGCTGGTTTTGCAAGTTTTGTGAATGTAAAATAGAAATACTTGAAGCAACAAATGCCCATCTTGGGACTCAATTCTCCTTGGACAGTACTTGGCAGGATGTATTCAAGGAAGAGGCTGCTTTACCGGATGGTGATAATGTATTACTAAATCAAGAAGAAGAATTGCCATCAGATGATCCCGATGACGATGATTATAATCCAGAGAGGAGGGAAGACAACCTCAGCACCAACGTAGAAGGAACTGATGATAATGCATCTTTTGATTCAAGCAGTTCCACCAGTGTGTGGTCTTTGAATAGTGAATGTTCTCTAGTAGATGAAGCCGTTGGCCGTGAATACTGTTCTGTGAATAGATGCATAGATTCTGACGATTCTGGGAAAATAACATGTGGCCATAGGCAGCGTAAAGCAGTTGACTACAAGAAACTTCATGATGTGAGTATATCAAAGTTCTCCGTTCATCATAAGCTTATATTGAAGTTCTTAAGAGCACATTTGAATACTTTAGCAGTAATAGATGAAATGTTTGGGAAGGATGCTCCTCTATTTGAACAAGTCAGCGAAGATGAAGATTGGGGTCCTGGCAAGAGAAAGCGAAGAGAAAAGGAGTCCGATGCTGCTAATACTCTTATGACACTGCATGAAATTGAAAATAAATATTCTAACAACGATTCGATAAGAGAGGGCTCTTCTTACCTACACAAAAAAAGACCTTGTTTCAGGATTCCACATGATGCAGTTGAGAAGCTTCGTCACGTGTTCGCACGGAATGAACTTCCTTCAAGATCCGTAAGAGAAGCTCTTTCGAAAGAGTTGGGACTTGACTTTGTGAAGGTTAACAAATGGTTCAAAAATGCACGTTACGCAGCACTTAAAACCAGAAAGCATGCTTACGATATGACCTTTAATATGTTGCACTGTCAATCTGAAGGAGAACAACTTAAGAGTTTCACTTCTAAGACCTCAAAGGATTCTAAATCACAAAATGTAGACAAAGATGAGCTTCTGAGATCAAAGGCCTCTAAAATTTCCACAGTTCATTGCCAGAAGAATGGTAAAAATGTCGCAGGCAGTGAGAAAATAAAGTCATGTTGCATTCCTTTTCAGGAAAGGCGACAAGAAAACAGCAACAAGATAATGTCGAAAAACGAAAATGGCAACAAGGACAAGGAGGTAAGTGATGATGTTTGCTTGAAGAAACTGTTGAAAGAAAGGAAAAGGAGGATAAATTCTAAATTTGAAGGAGACTTTCATGCAGCAGAGTTAGAATTTGAAAGACTTAGCAAAGTGAAGAACAAAGTAAATAGTATAAAGCAAAGACTAATTGAAGTTCAAAATTGCAGAGCAAAGAGTTCAGATGAATCATGTTCAAATGAATCATCTGTTACATATGTACCTATAGCTGAGTTAAGGGAAAAGTTTTAA 2319 0.3885 MKDTDKKLNIRGPRKCSHSKERTELKLDSSSRFDASITKGRVKKNRLKSKSHKHIVGTNTSRMEVNDSSIEGPIKDYSNKKLIIRQNLCKTDGKSSPLQSSMTLHGKKTSLCSRKEGEDIDQEAKIHKMKRRRKKKRQRDNVDLDDALRLQRRTRNLLIRMKQEQNLIDAYSGEGWKGQSFVADHSSLFLRKRPHSREKIRPEKELQRAKKQILRCKLSIRDAIRQLDSLSSVGSIEGSVIAPDGSVYHEHIFCANCKLREAFPDNDIILCDGSCNRAFHQRCLDPPLDTENIPPEDQGWFCKFCECKIEILEATNAHLGTQFSLDSTWQDVFKEEAALPDGDNVLLNQEEELPSDDPDDDDYNPERREDNLSTNVEGTDDNASFDSSSSTSVWSLNSECSLVDEAVGREYCSVNRCIDSDDSGKITCGHRQRKAVDYKKLHDVSISKFSVHHKLILKFLRAHLNTLAVIDEMFGKDAPLFEQVSEDEDWGPGKRKRREKESDAANTLMTLHEIENKYSNNDSIREGSSYLHKKRPCFRIPHDAVEKLRHVFARNELPSRSVREALSKELGLDFVKVNKWFKNARYAALKTRKHAYDMTFNMLHCQSEGEQLKSFTSKTSKDSKSQNVDKDELLRSKASKISTVHCQKNGKNVAGSEKIKSCCIPFQERRQENSNKIMSKNENGNKDKEVSDDVCLKKLLKERKRRINSKFEGDFHAAELEFERLSKVKNKVNSIKQRLIEVQNCRAKSSDESCSNESSVTYVPIAELREKF 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1560 772 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 1 749 - -
Lal4g1560 772 CDD homeodomain 533 586 IPR001356 GO:0003677
Lal4g1560 772 CDD PHD_PRHA_like 253 305 IPR045876 -
Lal4g1560 772 ProSiteProfiles Zinc finger PHD-type profile. 251 308 IPR019787 -
Lal4g1560 772 MobiDBLite consensus disorder prediction 351 392 - -
Lal4g1560 772 Gene3D - 532 595 - -
Lal4g1560 772 ProSiteProfiles 'Homeobox' domain profile. 531 591 IPR001356 GO:0003677
Lal4g1560 772 SUPERFAMILY Homeodomain-like 533 596 IPR009057 -
Lal4g1560 772 Pfam Homeodomain 542 586 IPR001356 GO:0003677
Lal4g1560 772 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 302 IPR013083 -
Lal4g1560 772 SUPERFAMILY FYVE/PHD zinc finger 245 310 IPR011011 -
Lal4g1560 772 MobiDBLite consensus disorder prediction 1 24 - -
Lal4g1560 772 PANTHER POLYCOMB PROTEIN PCL 1 749 - -
Lal4g1560 772 MobiDBLite consensus disorder prediction 376 392 - -
Lal4g1560 772 ProSitePatterns Zinc finger PHD-type signature. 254 305 IPR019786 -
Lal4g1560 772 SMART HOX_1 533 595 IPR001356 GO:0003677
Lal4g1560 772 SMART PHD_3 253 306 IPR001965 -
Lal4g1560 772 MobiDBLite consensus disorder prediction 122 141 - -
Lal4g1560 772 Pfam PHD-finger 253 308 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1560 Lal-Chr4 19791663 19797379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1560 137 593 Homeobox Transcription Factor Family AT4G29940 52.532 2.12e-143 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Lal4g1560 Homeodomain 3.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1560 - - gmx:100816912 887.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1560 4 19791663 19797379 Lal4g1560 4 19791663 19797379 ECH
Lal7g1100 7 16985239 16991423 Lal4g1560 4 19791663 19797379 PCT
Lal4g1560 4 19791663 19797379 Lal7g1100 7 16985239 16991423 PCT