Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1559 ATGGAGAATATTGGTGAGGAATACAAGCATTACTGGGAAACCAACATGTTCCTCCAAACTCAAGAACTTGACAGTTGGGGACTAGATGAAGCCTTATTTGTGTACTATGATTCGAGTTCTCCAGATGGGCCCACATCAGCAGCAACATCTAAGAACATTGTCTCTGAGAGGAATAGAAGGAAGAAACTCAATGAAAGGCTTTTTGCACTTAGATCAGTAGTACCCAACATTAGCAAGATGGATAAGGCTTCAATTATTAAGGATGCAATTGAGTATATCCAACACTTGCATGAAGAAGAGAAGAATATCAAAGCTGAGATAATGGAACTTGAATCTGAAGTGCTGATTATGAATCCAAACTATGACTTTCAACAGGACCTGCCTTTGTTGTTGAGCTCTAAGAAGAAGAAAATAGAACAGCAGCTTTATGATTCTGTCACTCCTACAAATTACCCTATTCAAATCCTTGAGCTGAGGGTTACATACATGGGAGAGAAGAGTATTGTGGTGAATATGAGATGTAACAAAAGGAGAGACACAATGGTGAAACTATGTGAAGTGTTTGAATCTTTAAAGCTCAAGGTTATCACTGCTAATGTCACTTCTTTTTCAGACACTCTTTTTAAGACAATCTTCATTGAGGCAGAAGAAGAAGAGAAAGATCTTTTGCAGATAAAGATTCAGACAGCAATTGCAGCTCTTAATGATCCTTTAAGTTCTATGAGCATATGA 732 0.377 MENIGEEYKHYWETNMFLQTQELDSWGLDEALFVYYDSSSPDGPTSAATSKNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIEYIQHLHEEEKNIKAEIMELESEVLIMNPNYDFQQDLPLLLSSKKKKIEQQLYDSVTPTNYPIQILELRVTYMGEKSIVVNMRCNKRRDTMVKLCEVFESLKLKVITANVTSFSDTLFKTIFIEAEEEEKDLLQIKIQTAIAALNDPLSSMSI 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1559 243 Coils Coil 93 113 - -
Lal4g1559 243 Pfam Helix-loop-helix DNA-binding domain 54 97 IPR011598 GO:0046983
Lal4g1559 243 PANTHER TRANSCRIPTION FACTOR BHLH35 1 237 - -
Lal4g1559 243 Gene3D - 47 123 IPR036638 GO:0046983
Lal4g1559 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 46 114 IPR036638 GO:0046983
Lal4g1559 243 SMART finulus 53 102 IPR011598 GO:0046983
Lal4g1559 243 Coils Coil 213 233 - -
Lal4g1559 243 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 237 - -
Lal4g1559 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 96 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1559 Lal-Chr4 19784064 19790305 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1559 1 214 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 60.092 3.64e-80 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal4g1559 HLH 2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1559 - - gmx:100817978 369.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1559 4 19784064 19790305 Lal4g1559 4 19784064 19790305 ECH
Lal21g1229 21 15335944 15345766 Lal4g1559 4 19784064 19790305 LSH