Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1557 ATGGGTGAGGAGGTAGTGAAAACAGTTGTTCCTGAATCTGTTTTGAAAAAGCAGAAAAGGAATGATGAATGGGCTTTGGCAAAAGCTCAAGAACTTGTAGCTGCAAAGAAAAAGAGGGTTGAATCACGCAAGTTGATTTTTAACAGAGCCAAATTGTATGCAAAAGAATATGATGAACAACAAAAGGAGTTGATTAGGTTGAAGCGTGAAGCAAAGCTTAAGGGTGGGTTTTATGTTGACCCTGAAGCTAAGCTCTTGTTCATAATCAGGATCCGTGGTATCAATGGTATGGACCCAAAGTCGAGGAAGATTTTGCAGCTTCTGCGTTTGAGACGGATCTTCGGGGGTGTCTTTCTCAAAGTTAACAAAGCAACCTTGAATATGCTGCACAGGGTTGAACCTTATGTTACCTATGGGTACCCAAATTTGAAGAGTGTCAGAGAACTAATCTATAAGAGGGGCTTTGGAAAGGTTAATAAACAGAGAATTGCTTTGACAGATAACTCAATTATTGAACAGACTTTAGGGAAATATGGAATTATTTGCATTGAAGATTTGATCCATGAGATTTTGAGTGTTGGACCACACTTCAAGGAGGCTAATAACTTTCTGTGGCCTTTCAATCTGAAAGCTCCTTTGGGTGGTTTGAAGAAGAAAAGAAATCATTATGTTGAAGGAGGTGATGCTGGCAACAGAGAAGTTTACATAAATGAGCTTATTAGAAGGATGAATTAG 735 0.3891 MGEEVVKTVVPESVLKKQKRNDEWALAKAQELVAAKKKRVESRKLIFNRAKLYAKEYDEQQKELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINGMDPKSRKILQLLRLRRIFGGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGFGKVNKQRIALTDNSIIEQTLGKYGIICIEDLIHEILSVGPHFKEANNFLWPFNLKAPLGGLKKKRNHYVEGGDAGNREVYINELIRRMN 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1557 244 Pfam Ribosomal L30 N-terminal domain 10 81 IPR012988 -
Lal4g1557 244 Gene3D - 85 190 IPR036919 -
Lal4g1557 244 Gene3D - 192 244 IPR036919 -
Lal4g1557 244 TIGRFAM uL30_euk: 60S ribosomal protein uL30 11 244 IPR005998 GO:0000463|GO:0003735|GO:0022625
Lal4g1557 244 Pfam Ribosomal protein L30p/L7e 86 136 IPR016082 -
Lal4g1557 244 SUPERFAMILY Ribosomal protein L30p/L7e 85 244 IPR036919 -
Lal4g1557 244 PANTHER 60S RIBOSOMAL PROTEIN L7-RELATED 7 244 - -
Lal4g1557 244 CDD Ribosomal_L7_archeal_euk 85 244 IPR035808 -
Lal4g1557 244 PANTHER 60S RIBOSOMAL PROTEIN L7 7 244 IPR039699 -
Lal4g1557 244 Coils Coil 50 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1557 Lal-Chr4 19766056 19770960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1557 1 244 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 81.967 4.93e-150 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1557 K02937 - jre:109021767 429.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1557 4 19766056 19770960 Lal4g1557 4 19766056 19770960 ECH
Lal17g1554 17 16981805 16984391 Lal4g1557 4 19766056 19770960 LSH
Lal21g1222 21 15278464 15281892 Lal4g1557 4 19766056 19770960 LSH