Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1552 ATGGAAGGTGAGAAACCATGCACCTTTGGTCTAAGTCTAGGGTTAGGAATTGGAGGGTATGTGCCAAAAAAGGAGAAGCAGAAAGTTCACAAACATGTTCCTTGCATGGACCTAACATTTGATCTTTATCCCAAAGGAGAAGCCATTGATGTGAATCATGATGATCATCATAAGGTAAAAGGGTTAAATTTGAAGAGAATCAATGATGAAGAATACCAAGATCCAAATTCCAAGAGTGATGATAACATGACCAATAACAAGAATGGTAGCAGAAAGAAACTGAGGCTCACAAAGGAGCAATCAGCTATGCTTGAGAATAGTTTCAATCTGCATAATACTCTTAGCCCGGGTTCTACCCACAAGGCTCAGAAACATGCACTTGCTGAGAAATTGAATTTAAAGCATAGACAAGTCGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACCAAGCTGAAACAAACAGAAGTGGATTGTGAGTCCTTAAAGAAATGCTGTGAAAAACTAACCAATGAAAACCTAAGGTTGAAGAAGGAATTACAGGAGCTATGTGCTCTAAAAGTTAGACTCTCTCAAGTTGCAACCATGGCTACATGTTCATCTTGCAAGGATCCAAAGCAGCATTGA 624 0.3942 MEGEKPCTFGLSLGLGIGGYVPKKEKQKVHKHVPCMDLTFDLYPKGEAIDVNHDDHHKVKGLNLKRINDEEYQDPNSKSDDNMTNNKNGSRKKLRLTKEQSAMLENSFNLHNTLSPGSTHKAQKHALAEKLNLKHRQVEVWFQNRRARTKLKQTEVDCESLKKCCEKLTNENLRLKKELQELCALKVRLSQVATMATCSSCKDPKQH 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1552 207 Pfam Homeobox associated leucine zipper 152 185 IPR003106 GO:0006355|GO:0043565
Lal4g1552 207 PANTHER - 57 203 - -
Lal4g1552 207 MobiDBLite consensus disorder prediction 67 92 - -
Lal4g1552 207 ProSiteProfiles 'Homeobox' domain profile. 87 152 IPR001356 GO:0003677
Lal4g1552 207 SMART halz 152 195 IPR003106 GO:0006355|GO:0043565
Lal4g1552 207 SMART HOX_1 89 156 IPR001356 GO:0003677
Lal4g1552 207 Pfam Homeodomain 91 150 IPR001356 GO:0003677
Lal4g1552 207 ProSitePatterns 'Homeobox' domain signature. 127 150 IPR017970 GO:0000981|GO:0006355
Lal4g1552 207 SUPERFAMILY Homeodomain-like 77 153 IPR009057 -
Lal4g1552 207 Gene3D - 83 158 - -
Lal4g1552 207 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 57 203 - -
Lal4g1552 207 Coils Coil 151 185 - -
Lal4g1552 207 CDD homeodomain 91 153 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1552 Lal-Chr4 19728752 19729954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1552 79 202 Homeobox Transcription Factor Family AT4G37790 62.595 2.65e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal4g1552 Homeodomain 2e-13 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1550 17 16902530 16904278 Lal4g1552 4 19728752 19729954 LSH
Lal7g1086 7 16854945 16856203 Lal4g1552 4 19728752 19729954 PCT
Lal4g1552 4 19728752 19729954 Lal7g1086 7 16854945 16856203 PCT