Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1542 ATGGGATGCAACAAAGAAGAAATTGAGCTTGGATTCTCAAATATGTCTCAAGATGATATTCAAAAAACACTTAGGAGTTTATTTCCAGAAGAATTTTGTAGACAAACACAACCAATAATTGATCCAAATCAACCTTCATCATCTTCATCTTCTTTGAGATCATTATCCACAGATAGCCCTGAATATTCATCATTGATATTCAATATTCCTGAAACTCTTGGAGGGATAATTACTACAATGCCACTTGTGTCATCAAACATAACAACAACAAGTCCAATACACCAACAAATGAATCCAAGTTCAACTCATCAATTCAACACACCAGAAAATGAACAAGATGCAATAATGAGAGCAATGTTATATGTTTTAACTTCACCTACTTCTTCAACTTCTTATCAGAATCAAACCCACAAAAACTTACCTTATACTAATCCACAAACTAATAGTGCTTTCAAGAGGTATAGGCCAAATTTAGGACCAAATAACATGCCTCTAAAGGTGTCGAATTTTCGAAGAGAAAGCATGCTGAATAGATCATTTGTGTTCTTTAGAAACTTGAACTTGTCAAGAATGAGAGAACACATTGAAGCTACACATTCCAGTAGTACACAGATGCATCACATGATATCAGAGAGAAGAAGGCGTGAGAAACTTAATGAGAATTTTCAGGCACTTAGAGCATTACTTCCTCCAGGAACTAAGAAAGACAAAGCATCCATACTAACATCAGCAAAGGAGACATTGAAATCTTTGATGGTTGAAATTGAAAATCTAAGTTTAAGAAATCAAGATTTGGTGTCAGTTGTCCCAACAAAAGAATCTAGTACTCATCAAAAAACCAAAGCTAGTTTCTCATCAAATGAAACATTCAATGTTCAAGTCTCACATGTACCACAATCAAGCTCATCAGAAGAGAGAATTGTTGAATTTCAAGTGAATTTGAGAGGACATGTTTCTCAAGTTGATATATTGATTAGCTTATTGGAATTCTTAAAGAAAACTCATAATGTGAACTTGATTTCCATTGAAGCAACACAAGGGAATGCACTTCATCAACTAAACTTCACACTAAGGATTGTTGAGGGAAGTGAATGGGACGAGTCTAGTTTCGAGGAAGCAGTGAGAAGAGTGGTTAGTGACTTGATACAATGGCAAGTGGACCAATAG 1167 0.3505 MGCNKEEIELGFSNMSQDDIQKTLRSLFPEEFCRQTQPIIDPNQPSSSSSSLRSLSTDSPEYSSLIFNIPETLGGIITTMPLVSSNITTTSPIHQQMNPSSTHQFNTPENEQDAIMRAMLYVLTSPTSSTSYQNQTHKNLPYTNPQTNSAFKRYRPNLGPNNMPLKVSNFRRESMLNRSFVFFRNLNLSRMREHIEATHSSSTQMHHMISERRRREKLNENFQALRALLPPGTKKDKASILTSAKETLKSLMVEIENLSLRNQDLVSVVPTKESSTHQKTKASFSSNETFNVQVSHVPQSSSSEERIVEFQVNLRGHVSQVDILISLLEFLKKTHNVNLISIEATQGNALHQLNFTLRIVEGSEWDESSFEEAVRRVVSDLIQWQVDQ 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1542 388 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 202 251 IPR011598 GO:0046983
Lal4g1542 388 MobiDBLite consensus disorder prediction 129 148 - -
Lal4g1542 388 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 1 381 - -
Lal4g1542 388 Coils Coil 208 228 - -
Lal4g1542 388 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 1 381 IPR044658 -
Lal4g1542 388 SMART finulus 208 257 IPR011598 GO:0046983
Lal4g1542 388 Gene3D - 200 277 IPR036638 GO:0046983
Lal4g1542 388 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 202 266 IPR036638 GO:0046983
Lal4g1542 388 Coils Coil 241 261 - -
Lal4g1542 388 Pfam Helix-loop-helix DNA-binding domain 205 251 IPR011598 GO:0046983
Lal4g1542 388 CDD bHLH_AtbHLH_like 207 259 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1542 Lal-Chr4 19546226 19550850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1542 1 381 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 37.736 1.58e-62 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal4g1542 HLH 5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1542 - - gmx:100798452 422.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1542 4 19546226 19550850 Lal4g1542 4 19546226 19550850 ECH
Lal17g1527 17 16611519 16617198 Lal4g1542 4 19546226 19550850 LSH