LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal4g1541	ATGGAACCTCGCGTTGGGAATAAATTTCGGCTTGGCCGCAAGATTGGTAGCGGCTCCTTTGGGGAGATCTACTTAGGTACTAATGTTCAAACTAATGAAGAGGTTGCAATTAAGCTTGAAAATGTCAAGACAAAGCATCCTCAACTGCTGTATGAGTCCAAGCTGTACAAAATTCTCCAGGGAGGAACTGGAATACCAAATCTGAAATGGTTTGGGGTGGAAGGAGATTACAATGTTCTTGTGATGGATCTGCTTGGACCTAGTCTTGAAGATCTGTTTAACTTTTGTAGCAGAAAACTCTCACTAAAAACAGTTCTCATGCTAGCTGATCAAATGATCAATCGTGTTGAGTTTGTTCACTCTAAATCGTTTCTTCATCGAGATATCAAACCAGATAATTTCCTCATGGGCTTGGGAAGGCGGGCAAATCAGGTTTACTGTATTGACTTTGGTTTGGCGAAGAAATACAGAGATAGTTCAACCCATCAACACATTCCATACAGGCTGATTGGTCTTCCCCGTATTACACCAGAGTGCATCGGTGCACAGCACACATTTGTTGCTGAGTCATCAAGAGGTGGTTATGTTGTTAGAGTCAGAGACTGTTATAAATCTGTACAGGATCAGGTTGTAGTTCTTATCTGTAATGTCCCATCCATATTTCATAGCCTAGACTTGGCTGGTACTGTTTTGATATTACTTCATTTGTTGACGGCAAATAATCTATTTGATCATTTTAACTTCAGGGAGAATAAGAATTTGACTGGAACTGCAAGATATGCTAGCACAAATACTCATCTTGGCATTGAGCAAAGTCGAAGAGATGATCTAGAGTCTCTTGGTTATGTCTTGATGTACTTCCTGAGGGGAAGTCTCCCTTGGCAAGGACTTAAAGCAGGAAATAAGAAACAGAAGTATGATAAAATCAGTGAAAAGAAGGTTTCTACCTCAATTGAGGCCTTGTGTCGAGCTTATCCAACTGAATTTGCATCATACTTCCATTACTGCCGTTCATTAAGGTTTGATGATAAACCAGATTATGCTTACCTCAAAAGAATATTTCGCGACCTGTTTATTCGTGAAGGATTCCAGTTTGATTATGTGTTTGACTGGACTATCTTGAAGTATCAACAATCACAGCTAGCTACTCCTCCAGCACGTGGCATTGGTCCTAGCGCTGGAACTAGTTCTGGATTGCCTCTAGCTGCAACCAATGCTGATAGACAGACAGGAGGGGAAGAAGGGCGACCTCCTGGCCTGGTCTCAGGGGATTCATCACGCCGAAGAATGCCAGGGCCCATAGTAAACTCTGCAAGTTTTGCCAAGCAGAAAAGTCCAATCATGAATGATTCTTCTGTTAACAAGGATGCTACGTTATCGAGTACCAATTTCTTGGGTCAGTCAAGTGGATCAAGGCGAGTTGCTCTCTCTGGTAGCCATGAGGCAGTTGTTGGCAGTGAGTCTGATATTCGTACTCGTACAACTGAGTTTAGCTCTGGAGCAGCGTACAAAATTTCAAGCGGTCAAAAAAGTTCACCAATTGGATCTTCAGATCCCAAGAGAGTAGTACCATCTGGGAGAAATGCTTCTCATGTCAAGAATTATGAAGCTGCAGTCAAGGGCATTGAGGGTTTGCAGTTAGAGAATGAAGAGAGGGCCCATCACTGA	1668	0.4245	MEPRVGNKFRLGRKIGSGSFGEIYLGTNVQTNEEVAIKLENVKTKHPQLLYESKLYKILQGGTGIPNLKWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYCIDFGLAKKYRDSSTHQHIPYRLIGLPRITPECIGAQHTFVAESSRGGYVVRVRDCYKSVQDQVVVLICNVPSIFHSLDLAGTVLILLHLLTANNLFDHFNFRENKNLTGTARYASTNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGNKKQKYDKISEKKVSTSIEALCRAYPTEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQLATPPARGIGPSAGTSSGLPLAATNADRQTGGEEGRPPGLVSGDSSRRRMPGPIVNSASFAKQKSPIMNDSSVNKDATLSSTNFLGQSSGSRRVALSGSHEAVVGSESDIRTRTTEFSSGAAYKISSGQKSSPIGSSDPKRVVPSGRNASHVKNYEAAVKGIEGLQLENEERAHH	555

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal4g1541	555	MobiDBLite	consensus disorder prediction	501	534	-	-
	Lal4g1541	555	ProSitePatterns	Protein kinases ATP-binding region signature.	15	38	IPR017441	GO:0005524
	Lal4g1541	555	Gene3D	Phosphorylase Kinase; domain 1	2	85	-	-
	Lal4g1541	555	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	124	136	IPR008271	GO:0004672\|GO:0006468
	Lal4g1541	555	MobiDBLite	consensus disorder prediction	384	454	-	-
	Lal4g1541	555	Gene3D	Transferase(Phosphotransferase) domain 1	86	189	-	-
	Lal4g1541	555	SUPERFAMILY	Protein kinase-like (PK-like)	4	374	IPR011009	-
	Lal4g1541	555	MobiDBLite	consensus disorder prediction	438	454	-	-
	Lal4g1541	555	Pfam	Protein kinase domain	10	163	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lal4g1541	555	SMART	serkin_6	9	368	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lal4g1541	555	ProSiteProfiles	Protein kinase domain profile.	9	359	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lal4g1541	555	CDD	STKc_CK1_delta_epsilon	8	363	-	-
	Lal4g1541	555	Gene3D	Transferase(Phosphotransferase) domain 1	235	388	-	-
	Lal4g1541	555	MobiDBLite	consensus disorder prediction	501	518	-	-
	Lal4g1541	555	PANTHER	CASEIN KINASE I-LIKE	1	168	-	-
	Lal4g1541	555	PANTHER	CASEIN KINASE I-LIKE	246	538	-	-
	Lal4g1541	555	PANTHER	CASEIN KINASE-RELATED	246	538	-	-
	Lal4g1541	555	PANTHER	CASEIN KINASE-RELATED	1	168	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal4g1541	Lal-Chr4	19525155	19533166	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal4g1541	7	158	EF-hand Containing Proteins	AT2G17890	28.485	3.98e-11	63.5

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CK1_CK1	Lal4g1541		Pkinase	6.8e-22	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal4g1541	K02218		-	gmx:100785851	486.493