Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1539 ATGGCAGCAGCACCTGAAGGGTCACAGTTCGATGCTAAGCAATTTGATTCTAAGATGAATGACTTGCTTACATCTGATGGACAGGATTTCTTCACATCTTATGACGAGGTTCATGATAGTTTTGATGCTATGGGATTGCAAGAAAATCTCCTGAGAGGCATTTATGCATATGGTTTTGAGAAGCCATCAGCTATTCAACAAAGGGGAATAGTTCCATTCTGCAAGGGGCTTGATGTTATACAGCAGGCTCAGTCTGGAACTGGAAAGACAGCAACTTTCTGCTCTGGGATTCTGCAGCAGCTTGACTATAGCGTGACTGAATGCCAGGCCTTGGTTTTAGCGCCAACTCGTGAGCTTGCTCAGCAGATTGAGAAGGTTATGCGGGCACTTGGAGACTATCTAGGTGTGAAGGTGCATGCTTGTGTGGGAGGTACCAGTGTTCGCGAAGACCAGCGCATTCTATCAAGCGGTGTTCATGTTGTTGTTGGTACTCCTGGTCGTGTATTTGATATGCTGCGTAGACAGTCACTTAGGGCAGATTACATCAAGATGTTTGTATTGGATGAGGCTGATGAAATGCTTTCTCGGGGTTTTAAAGACCAGATCTATGATATATTCCAGCTGCTTCCATCTAAGATTCAAGTTGGAGTTTTCTCTGCTACTATGCCTCCTGAGGCACTTGAGATCACAAGGAAGTTTATGAATAAACCAGTGAGGATCCTTGTGAAGCGTGATGAGCTTACCTTGGAGGGTATAAAGCAGTTTCATGTCAATGTTGAGAAAGAGGAGTGGAAGCTGGACACTCTCTGTGATCTTTACGAGACATTGGCCATCACTCAGAGTGTCATCTTTGTGAACACCAGAAGGAAGGTTGATTGGCTGACTGACAAGATGCGAAGCCGAGACCACACTGTCTCAGCAACCCATGGAGACATGGACCAGAATACCCGTGACATTATTATGCGTGAATTCCGTTCTGGGTCTTCCCGTGTTTTAATAACTACTGATCTTCTGGCTCGTGGTATCGATGTCCAGCAAGTGTCTCTAGTTATAAACTATGATCTGCCAACACAGCCAGAGAATTATCTCCATCGTATTGGTCGTAGTGGAAGGTTTGGTAGGAAGGGTGTTGCCATCAACTTTGTGACAAAGGACGATGAAAGAATGCTTTTTGACATCCAGAAGTTCTATAATGTGGTAATTGAGGAGCTGCCTTCGAATGTTGCTGAACTCCTCTGA 1239 0.4487 MAAAPEGSQFDAKQFDSKMNDLLTSDGQDFFTSYDEVHDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSVTECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRADYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVVIEELPSNVAELL 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1539 412 PANTHER EUKARYOTIC INITIATION FACTOR 4A-8-LIKE 22 412 - -
Lal4g1539 412 Pfam DEAD/DEAH box helicase 64 225 IPR011545 GO:0003676|GO:0005524
Lal4g1539 412 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 39 67 IPR014014 GO:0003724
Lal4g1539 412 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 251 412 IPR001650 -
Lal4g1539 412 SMART ultradead3 58 255 IPR014001 -
Lal4g1539 412 CDD DEADc_EIF4A 43 241 - -
Lal4g1539 412 PANTHER RNA HELICASE 22 412 - -
Lal4g1539 412 SMART helicmild6 292 373 IPR001650 -
Lal4g1539 412 Gene3D - 29 246 IPR027417 -
Lal4g1539 412 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 393 IPR027417 -
Lal4g1539 412 Gene3D - 247 412 IPR027417 -
Lal4g1539 412 Pfam Helicase conserved C-terminal domain 265 373 IPR001650 -
Lal4g1539 412 CDD SF2_C_DEAD 252 382 - -
Lal4g1539 412 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 186 194 IPR000629 -
Lal4g1539 412 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 70 240 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1539 Lal-Chr4 19509448 19512833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1539 4 412 Eukaryotic Initiation Factors Gene Family AT1G72730 88.780 0.0 763
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1539 K03257 - gmx:100788218 799.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1539 4 19509448 19512833 Lal4g1539 4 19509448 19512833 ECH
Lal17g1518 17 16550173 16553632 Lal4g1539 4 19509448 19512833 LSH
Lal21g1195 21 14782342 14786069 Lal4g1539 4 19509448 19512833 LSH