Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1532 ATGGACGGCGGCGGCGCTCACTACAACCCTCGCTCCGTCGAAGCTGTCTTCCGCGACTTCAGGGGCCGCAGGATTGCCCTCACCAAAGCCCTAACCACCGATGTGGTGGAATTTTATCAGCAGTGTGATCCAGAAAAGGAGAATCTTTGTCTGTATGGTTTCCCCACTGAAAAATGGGAAGTTAATTTACCTGCTGAAGAAGTTCCTCCTGAACTTCCCGAGCCTGCATTGGGCATAAACTTTGCTAGGGATGGGATGCAAGAAAAGGATTGGCTTTCTTTGGTTGCTGTTCACAGTGATGCATGGCTACTTTCAGTGGCTTTCTACTTTGGGGCAAGATTTGGTTTTGATAATGCCGATCGGAAACGCCTGTTCACTATGATTAATGATCTGCCAACAATATTTGAGGTTGTGACTGGAACTGCAAAGAAACAGTCAAAGGAAAAGTCATCAGTTTCAAACCACACCAGCAACAAATCAAAGTCCGGCTCTAAAGGGCGAGGATCGGAGTCAAGGAAGTATTCAGAGCAAACAAAAGATGAGGAGGAGGAGGAGGTGGTGGAGGAATTGGATGAAGACGAGGGACATTGTGGTGCATGTGGGGAGATTTATACATCTGAATCTGTTGAGTTCTGGATTTGTTGTGACGTGTGCGAGAAATGGTTCCACGGTAAATGTGTGAAGATCACTCCTGCCAGAGCTGATCAGATCAACCATTATAAGTGCCCCTTATGCAGCAATAAAAGAGCTCGCCCGTGA 759 0.4717 MDGGGAHYNPRSVEAVFRDFRGRRIALTKALTTDVVEFYQQCDPEKENLCLYGFPTEKWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDNADRKRLFTMINDLPTIFEVVTGTAKKQSKEKSSVSNHTSNKSKSGSKGRGSESRKYSEQTKDEEEEEVVEELDEDEGHCGACGEIYTSESVEFWICCDVCEKWFHGKCVKITPARADQINHYKCPLCSNKRARP 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1532 252 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 6 252 - -
Lal4g1532 252 MobiDBLite consensus disorder prediction 146 190 - -
Lal4g1532 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 251 IPR013083 -
Lal4g1532 252 CDD PHD_AL_plant 197 248 IPR044104 -
Lal4g1532 252 SMART PHD_3 196 246 IPR001965 -
Lal4g1532 252 MobiDBLite consensus disorder prediction 165 180 - -
Lal4g1532 252 MobiDBLite consensus disorder prediction 146 164 - -
Lal4g1532 252 PANTHER CPG BINDING PROTEIN 6 252 IPR045104 GO:0006355|GO:0042393
Lal4g1532 252 Pfam Alfin 13 140 IPR021998 GO:0006355|GO:0042393
Lal4g1532 252 ProSitePatterns Zinc finger PHD-type signature. 197 245 IPR019786 -
Lal4g1532 252 SUPERFAMILY FYVE/PHD zinc finger 190 249 IPR011011 -
Lal4g1532 252 Pfam PHD-finger 197 248 IPR019787 -
Lal4g1532 252 ProSiteProfiles Zinc finger PHD-type profile. 194 248 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1532 Lal-Chr4 19424366 19428781 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1532 1 251 Alfin-like Transcription Factor Family AT3G42790 69.804 5.42e-114 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lal4g1532 Alfin 1.5e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1532 - - gmx:100170695 406.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1532 4 19424366 19428781 Lal20g1047 20 14332126 14339713 ECH
Lal4g1532 4 19424366 19428781 Lal8g0296 8 1986896 1990757 ECH
Lal4g1532 4 19424366 19428781 Lal10g1079 10 17747486 17751145 ECH
Lal4g1532 4 19424366 19428781 Lal21g0279 21 1847545 1850781 ECH
Lal4g1532 4 19424366 19428781 Lal4g0178 4 1117072 1121114 ECH
Lal4g1532 4 19424366 19428781 Lal4g1532 4 19424366 19428781 ECH
Lal17g1508 17 16461772 16466748 Lal4g1532 4 19424366 19428781 LSH
Lal21g1192 21 14717541 14723804 Lal4g1532 4 19424366 19428781 LSH