Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1531 ATGAAGCCGTTTCTCTTGTTGAATCATCCTGATACTGTGTTTAATTGTGGACAAGTTGATTCTAACCACTCAATGGCTCATGCTTCTTATCCTTATGGCGATCCTTTTTACGATGGTTCCTTAGCTGCTTATGGACCACAGGCAATTAATCAATCTCAAAAGTTGCCCCAAATGCTGGGATTAGCTTCTACCAGAGTTGCATTACCACTTGATCTTGCAGAAGATGGACCCATTTATGTCAATGCGAAACAGTACCATGGCATATTGAGAAGGCGACAATCACGAGCAAAGCTTGAGGCTCAAAACAAACTCATCAAAAGTCGTAAGCCATATCTTCATGAGTCTCGACATCGTCATGCTGTGAATAGAGTTAGGGGATCCGGGGGACGCTTTCTGAGTACCAAGCAGCTTCAACAATCTAATGCAGAACATGTCACTGGTGCACATTCTAGCTCAGACCCTGTCAACATATATCAAAAGAATGATGCACCAGAAGTGGAAAGTCATCCCACAAGTACCGGAGAAAATACATCTTCCATCACTAAACGTACATGTTTATCGAATAACAACTTCAATTTTAGGCAGACGGAGCACATATTCCTAGGAAACTCTACAAACATAGGGGAGGATCACAATGCTGGTGGACTTACCTTTGGTGGAACACAGCAGCGTGCTCCAATTGTCCGGTGA 690 0.4319 MKPFLLLNHPDTVFNCGQVDSNHSMAHASYPYGDPFYDGSLAAYGPQAINQSQKLPQMLGLASTRVALPLDLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHAVNRVRGSGGRFLSTKQLQQSNAEHVTGAHSSSDPVNIYQKNDAPEVESHPTSTGENTSSITKRTCLSNNNFNFRQTEHIFLGNSTNIGEDHNAGGLTFGGTQQRAPIVR 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1531 229 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 77 131 IPR001289 GO:0003700|GO:0006355
Lal4g1531 229 ProSitePatterns NF-YA/HAP2 subunit signature. 79 99 IPR018362 GO:0003677|GO:0016602
Lal4g1531 229 ProSiteProfiles NF-YA/HAP2 family profile. 74 134 IPR001289 GO:0003700|GO:0006355
Lal4g1531 229 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 1 208 - -
Lal4g1531 229 Gene3D - 74 136 - -
Lal4g1531 229 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 208 IPR001289 GO:0003700|GO:0006355
Lal4g1531 229 PRINTS CCAAT-binding transcription factor subunit B signature 77 99 IPR001289 GO:0003700|GO:0006355
Lal4g1531 229 PRINTS CCAAT-binding transcription factor subunit B signature 108 131 IPR001289 GO:0003700|GO:0006355
Lal4g1531 229 SMART cbf3 73 134 IPR001289 GO:0003700|GO:0006355
Lal4g1531 229 MobiDBLite consensus disorder prediction 137 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1531 Lal-Chr4 19414944 19422909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1531 17 179 CCAAT-HAP2 Transcription Factor Family AT1G17590 49.133 2.61e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lal4g1531 CBFB_NFYA 3.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1531 K08064 - gmx:100793856 331.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1531 4 19414944 19422909 Lal4g1531 4 19414944 19422909 ECH