Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1528 ATGGCACAAATCCAAATAAGCAAGAAGCGAAAGTTCGTAGCCGATGGAGTTTTCTTCGCTGAACTGAACGAGGTTTTGACTAGAGAACTCGCTGAGGATGGTTACTCTGGTGTTGAAGTTAGGGTTACTCCTATGCGCACTGAGATTATTATCAGAGCCACTCGTACCCAAGCCGTTCTTGGTGAGAAGGGAAGGAGAATTAGGGAGCTGACCTCAGTGGTGCAGAAGAGGTTCAAGTTCGAAGAGAACACTGTGGAGCTTTATGCTGAGAAGGTGAACAACAGGGGTCTGTGTGCTATTGCCCAGGCTGAGTCTCTTCGCTACAAGCTACTTGGTGGCCTTGCTGTCCGGAGGGCCTGCTATGGTGTTTTGAGATTTGTCATGGAAAGTGGTGCTAAGGGATGTGAGGTCATTGTTAGTGGAAAATTGAGGGCCCAGAGAGCCAAATCCATGAAGTTCAAGGATGGGTACATGATTTCTTCCGGGCAACCAGTTAAGGATTACATCGACTCTGCAGTGAGACATGTGCTCCTCAGACAGGGTGTTCTTGGTATCAAGGTTAAGATAATGCTGGATTGGGATCCTAAAGGAAAGCAGGGTCCCAAAACTCCCCTCCCTGATATCGTCACAATCCACACTCCAAAGGAGGAGGAAGAATACATCCGGCCTCCTCCTGCTGTTATTGCAAATGAAATTGAAGTCCCTGTGACTGTGGCTTGA 720 0.4806 MAQIQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFEENTVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYIRPPPAVIANEIEVPVTVA 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1528 239 Gene3D - 1 92 IPR015946 -
Lal4g1528 239 Pfam Ribosomal protein S3, C-terminal domain 107 189 IPR001351 GO:0003735|GO:0006412
Lal4g1528 239 ProSiteProfiles Type-2 KH domain profile. 22 93 IPR004044 GO:0003723
Lal4g1528 239 Pfam KH domain 21 94 IPR004044 GO:0003723
Lal4g1528 239 TIGRFAM uS3_euk_arch: ribosomal protein uS3 9 211 IPR005703 GO:0003735|GO:0006412|GO:0015935
Lal4g1528 239 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 11 100 IPR009019 GO:0003723
Lal4g1528 239 ProSitePatterns Ribosomal protein S3 signature. 148 184 IPR018280 -
Lal4g1528 239 SUPERFAMILY Ribosomal protein S3 C-terminal domain 94 192 IPR036419 -
Lal4g1528 239 CDD 40S_S3_KH 16 96 - -
Lal4g1528 239 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 4 234 - -
Lal4g1528 239 Gene3D - 94 220 IPR036419 -
Lal4g1528 239 PANTHER RIBOSOMAL PROTEIN S3, PUTATIVE-RELATED 4 234 - -
Lal4g1528 239 SMART kh_6 43 112 IPR004087 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1528 Lal-Chr4 19397147 19400270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1528 5 237 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 85.957 1.52e-148 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1528 K02985 - gmx:100499737 438.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1528 4 19397147 19400270 Lal4g1528 4 19397147 19400270 ECH