Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1506 ATGGCAACTACTCAACTCACAACATCATCAATTTCTGTGAGGAACATGGCATCCTTTGAAAGGCTTCGATTTTCACAGGTTCAGTGTCTTGCATGTGTGGGACATGTCAGAATTGCAAATTTAACACAAAGATCTTTCAGGGGTATGGTTGTCAAAGCCACCACTGTTGTTGCCCCCAAATATACCGGTATTAAGCCTCTCGGTGACAGAGTTCTTCTAAAAATCAAGGAAGCTGAAGAGAAGAGTCAGGGTGGGATTTTGCTTCCCTCAACAGCTCAAACTAAGCCTCAAGGTGGTGAAGTGGTTGCTGTCGGAGAAGGAAAAACATTTGGGAAGAGCAAAGTGGACATTAGTGTGAAGTTGGGGGAGCAAGTTGTGTACTCAAAGTATGCAGGTACTGAGGTGGAGTTCAATGGTACAAAGCATCTTATACTGAAAGATGATGACATTGTCGGTATCCTTGATACCGAAGATATCAAGGATCTTAAACCCTTGAATGATAGAGTCTTAATAAAGGTCGCCGAAGCTGAGGAAAGGACTGCGGGCGGTTTGTTACTTACCGAGGCAACCAAGGAGAAACCTTCTGTTGGCACAATAATAGCAGTTGGTCCAGGGCCTTTGGATGAGGAAGGTAACAGAACAGCTATATCTGTTACTCAAGGGAACACTGTATTGTACTCTAAATATGCTGGGAATGATTTCAAGGGCAAAGATGGTTCTGACTACATTGCTTTGAGAGCCTCAGATATCATAGCTGTCCTCTCTTAG 768 0.4362 MATTQLTTSSISVRNMASFERLRFSQVQCLACVGHVRIANLTQRSFRGMVVKATTVVAPKYTGIKPLGDRVLLKIKEAEEKSQGGILLPSTAQTKPQGGEVVAVGEGKTFGKSKVDISVKLGEQVVYSKYAGTEVEFNGTKHLILKDDDIVGILDTEDIKDLKPLNDRVLIKVAEAEERTAGGLLLTEATKEKPSVGTIIAVGPGPLDEEGNRTAISVTQGNTVLYSKYAGNDFKGKDGSDYIALRASDIIAVLS 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1506 255 Hamap Co-chaperonin GroES [groES]. 161 255 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal4g1506 255 ProSitePatterns Chaperonins cpn10 signature. 64 88 IPR018369 GO:0005524|GO:0006457
Lal4g1506 255 Pfam Chaperonin 10 Kd subunit 64 153 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal4g1506 255 Pfam Chaperonin 10 Kd subunit 162 253 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal4g1506 255 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 255 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal4g1506 255 SUPERFAMILY GroES-like 161 254 IPR011032 -
Lal4g1506 255 PIRSF Cpn21 1 255 IPR017416 GO:0006457|GO:0046914|GO:1901671
Lal4g1506 255 CDD cpn10 162 254 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal4g1506 255 Gene3D GroES chaperonin 56 156 IPR037124 GO:0006457
Lal4g1506 255 Gene3D GroES chaperonin 157 255 IPR037124 GO:0006457
Lal4g1506 255 ProSitePatterns Chaperonins cpn10 signature. 162 186 IPR018369 GO:0005524|GO:0006457
Lal4g1506 255 PANTHER GROES CHAPERONIN 1 255 - -
Lal4g1506 255 SUPERFAMILY GroES-like 62 155 IPR011032 -
Lal4g1506 255 PRINTS 10kDa chaperonin signature 64 79 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal4g1506 255 PRINTS 10kDa chaperonin signature 86 107 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal4g1506 255 PRINTS 10kDa chaperonin signature 120 132 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal4g1506 255 PRINTS 10kDa chaperonin signature 141 154 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal4g1506 255 Hamap Co-chaperonin GroES [groES]. 63 155 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal4g1506 255 CDD cpn10 64 154 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal4g1506 255 SMART Cpn10_2 63 154 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lal4g1506 255 SMART Cpn10_2 161 254 IPR020818 GO:0005524|GO:0006457|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1506 Lal-Chr4 19222039 19229095 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1506 1 255 Calmodulin-binding Proteins AT5G20720 72.374 1.91e-131 370
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1506 4 19222039 19229095 Lal4g1506 4 19222039 19229095 ECH
Lal17g1481 17 16247582 16250450 Lal4g1506 4 19222039 19229095 LSH
Lal21g1179 21 14532484 14536024 Lal4g1506 4 19222039 19229095 LSH
Lal7g1043 7 16571606 16581855 Lal4g1506 4 19222039 19229095 PCT
Lal19g1183 19 15269394 15272104 Lal4g1506 4 19222039 19229095 PCT
Lal4g1506 4 19222039 19229095 Lal7g1043 7 16571606 16581855 PCT
Lal4g1506 4 19222039 19229095 Lal19g1183 19 15269394 15272104 PCT