Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1505 ATGAAGAGTGATGATGTAACAGTGATTGCTACAAGTTCTGGTTTTGGGGATTGCATTAGAGGAATCCCATTTGATAATTGTGTTACTGTGGTAGAAGACTTGAGAACAAGGTGTAATCTTGTTACTAGTAAAGAAAAGTTTATAATGAAGGTTCCTACCAATGGTTACTTGCCTAATTCAGTGGAAGGGGAACGGAAGACCATCAATTCAGAGTTATGGCATGCTTGTGCTGGACCATTGGTTTCTTTACCTCGTGCTGGGAGTCTTGTGGTTTATTTCCCTCAAGGGCACAGTGAACAAGTTGCAGCGTCGATGCAAAAGGAGGCAGACTTCATACCAAGTTACCCTAATCTTCCGTCCAAATTGATTTGCATGCTTCACAGTGTTGCCTTGCATGCTGATCTTGAAACAGATGAAGTCTATGCACAAATGACCCTTCAACCTGTAAATAAATATGACAAGGAAGCAATGCTAGCATCAGACATGGGCCTCAAACAAAACCAACAACCTACTGAGTTCTTTTGCAAAACTCTTACCGCAAGTGACACAAGTACTCATGGTGGATTTTCTGTACCTCGTAGAGCAGCTGAGAAAATATTCCCACCTCTGGACTTTTCAATGCAACCTCCAGCTCAGGAAATTGTTGCCAAAGATTTGCATGACAACACATGGACATTTAGACATATTTATCGCGGACAACCGAAGAGGCATCTATTAACTACCGGTTGGAGTGTCTTTGTTAGCACAAAGAGATTGTTTGCCGGAGATTCTGTTCTTTTTATCAGAGATGAAAAACAGAAGCTTCTTTTAGGTATAAAGCGTGCAAGTAGACAGCAGCCAGCACTATCTTCATCTGTAATATCCAGTGATAGCATGCATATTGGCGTTCTTGCTGCTGCAGCTCATGCAGCTTCAAATAACAGCCCATTTACTATATTTTATAATCCAAGGGCCAGCCCCTCCGAATTTGTAATTCCATTGGCTAAGTATAATAAGGCCTTGTACACTCAAGTTTCTCTTGGAATGAGATTTAGAATGATGTTTGAGACTGAGGATTCCGGAGTACGCAGATATATGGGCACAATCACTGGAATCAGCGACTTGGATCCTGCTAGATGGAAAAATTCACAATGGCGCAATCTTCAGGTTGGATGGGATGAATCAACATCTGGTGAGCGCCCAGGCAGAGTTTCAATTTGGGGTATTGAACCAGTAGTAACTCCTTTCTACATTTGTCCACCTCCATTTTTTAGGCCCAAGTTCCCCAAGCAACCAGGAATGCCAGAAGATGAGTGTGACGTAGAAAATGCTTTCAAGAGGGCGATGCCCTGGCTCGGTGACGACCTTGGCATCAAGGATGCCTCAAGTTCATTATTCCCTGGTTTGAGCTTAGTGCAATGGATGAGCATGCAGCCGAATAATCAGTTCTCTCCTGCTCAATCAGGATTTTTTCCTTCATCCATGCTTTCATCTGATTCGCTGCACGGTAACCTTAAGATTGATGATCCATCCAAGTTATTGAACTTTCAAGCCCCCATGATGACTTCACCACCAAGTCTTCAATTTAACAAACTTAACCTACCAAACCAAGTCAACCAATTGCAACAGTCCCTGACATCATGGCCTCAGCAGAAGGAACAGCAGCAGAAGATGCAGTCGATGTTGCAAACACCAATGAACCAGCTCCAGCAGAAGCAACAGCAGCAGAGGCACCAACAGCTTCCTGAGCCACAAAACCAACCACAGCAACAACAGCCCCAACTGCCTCAACAGAGAGATCAGCAGCCACAACAACAGCAACAATTCTCTCAACAAACCATCATGAATAATGGGGCCGTTACTTCTAACCAAATTCCAAATCAGTGTATACAGCAACAAGTACCCTACTCTCAGCTTCAGCAACAGCAATTACTGTCAGGCAGTGTCCCACTCCAACAAAGCATCCAATCAGTCAGTAAGAACACATCGGTAACGACATTCTTACCACAAGACTCACAGTTTCAGCATCAGATAGACCAGCAAGCTAATCTATTACAGAGGCAGCAGCAGCAGGCACAGTTGCAACAATCTCCATTGCAGTTATTGCAACAAAGCATGTCACAGAGAGCATCACAACAACCACAAGTGACTCAAATGTCACAGCAAAGCCCCTCAGAGCAACAAATTCAGTTGCAGTTGCTACAGAAATTACAACAACAACAGCATCAGCAACTTCATTCCATGCCTAGCGCACTTTTGCAGTCTCAGTTTCTACAGCAGCAAAATCTTCATCAACAAAATCAGCAGTTACCACAGCTGCCTCCATCACCGCATCAGTCTCAACAACTTGGCAACAATGCGTTCTCAATGGAGAAGCTTCTCAACACCGACAACAACTTCTTTTCATCTCCAGTGCAATTACAACAGCCTCCTTTGAACCAATCCCTGTATACACAGAAATCACTTACTGCTACCATAGGCCCCTCCAGTCTTCCAGATGTAGATACCCCATCATGCTCAACTTCACCATCTTATAATAACTGCCAAATATCTCCTAACTTTCTGAAGAGAAATCATCAAGTACCATCCATATTAGGGGGGACTTCAGTAGTTGAGCCCACAAGTAATTTGATACAGGAGCTTCACAATAAGTCTGACATGCAAATTAAACATGAATTATCCGGTATGAAAGGACCTGACCAGCTAAAATATAAAGGGACAATCATGGATCACCTAGAAGCTTCTTCTGGAACATCTTACTGCATCGATCCTGTTAACATCCACCAGAACTTCCAACTTCCTAACTTCTGCTTGGACGGGGATGTTCAATCACACCCGAGAAGCAATCTACCATTTCCCTCCAACCTTTATGGTTTAACACCTGATACTTTGCTCTCAAGGGGTTATGACTCTCAAAAAGATCTTCAAAACTTGCTGTCTAATTATGGTAGTGCTCCAAGAGACATTGAAACAGAACTATCCACTGCTGATATCAGTCCTCAGTCATTTGGGGTTCGAAACATGCCTTGTAAGCCTGCTTGCTCAAATGATATGGCCATCAATGATAATGGGATTATGAATAATGGCTTGTGGGCTAACCAGACTCAACGAATGCGAACATATACTAAGGTTCAAAAAGTTGGATCTGTTGGAAGATGTATCGATGTCACCCGTTACAGAGGTTATGATGAACTCCGGTATGATTTAGCTAGCATGTTTGGGATTGAAGGGCAGCTTGAAGATCCTCAAAGGACCGAGTGGAAACTGGTATATGTGGATAATGAAAACGACATTCTTCTTGTTGGTGATGACCCTTGGGAAGAATTTGTAAGCTGTGTCCAGAGCATAAAGATATTGTCATGTGCTGAGGTGCAGAAAATGAGCTTGGATGGGGATTTAGGAGGTCATGTTCCAATCTCCAATCAAGCTTGTAGTGGGACAGAAAGTGGCAATGCATGGTATGATGATAACTCAGCAGGCTCATTTAATAGATAA 3474 0.4306 MKSDDVTVIATSSGFGDCIRGIPFDNCVTVVEDLRTRCNLVTSKEKFIMKVPTNGYLPNSVEGERKTINSELWHACAGPLVSLPRAGSLVVYFPQGHSEQVAASMQKEADFIPSYPNLPSKLICMLHSVALHADLETDEVYAQMTLQPVNKYDKEAMLASDMGLKQNQQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQKLLLGIKRASRQQPALSSSVISSDSMHIGVLAAAAHAASNNSPFTIFYNPRASPSEFVIPLAKYNKALYTQVSLGMRFRMMFETEDSGVRRYMGTITGISDLDPARWKNSQWRNLQVGWDESTSGERPGRVSIWGIEPVVTPFYICPPPFFRPKFPKQPGMPEDECDVENAFKRAMPWLGDDLGIKDASSSLFPGLSLVQWMSMQPNNQFSPAQSGFFPSSMLSSDSLHGNLKIDDPSKLLNFQAPMMTSPPSLQFNKLNLPNQVNQLQQSLTSWPQQKEQQQKMQSMLQTPMNQLQQKQQQQRHQQLPEPQNQPQQQQPQLPQQRDQQPQQQQQFSQQTIMNNGAVTSNQIPNQCIQQQVPYSQLQQQQLLSGSVPLQQSIQSVSKNTSVTTFLPQDSQFQHQIDQQANLLQRQQQQAQLQQSPLQLLQQSMSQRASQQPQVTQMSQQSPSEQQIQLQLLQKLQQQQHQQLHSMPSALLQSQFLQQQNLHQQNQQLPQLPPSPHQSQQLGNNAFSMEKLLNTDNNFFSSPVQLQQPPLNQSLYTQKSLTATIGPSSLPDVDTPSCSTSPSYNNCQISPNFLKRNHQVPSILGGTSVVEPTSNLIQELHNKSDMQIKHELSGMKGPDQLKYKGTIMDHLEASSGTSYCIDPVNIHQNFQLPNFCLDGDVQSHPRSNLPFPSNLYGLTPDTLLSRGYDSQKDLQNLLSNYGSAPRDIETELSTADISPQSFGVRNMPCKPACSNDMAINDNGIMNNGLWANQTQRMRTYTKVQKVGSVGRCIDVTRYRGYDELRYDLASMFGIEGQLEDPQRTEWKLVYVDNENDILLVGDDPWEEFVSCVQSIKILSCAEVQKMSLDGDLGGHVPISNQACSGTESGNAWYDDNSAGSFNR 1157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1505 1157 Pfam AUX/IAA family 1029 1117 IPR033389 -
Lal4g1505 1157 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 49 1146 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lal4g1505 1157 SMART B3_2 174 276 IPR003340 GO:0003677
Lal4g1505 1157 Gene3D - 171 275 IPR015300 -
Lal4g1505 1157 MobiDBLite consensus disorder prediction 536 603 - -
Lal4g1505 1157 PANTHER AUXIN RESPONSE FACTOR 19 49 1146 - -
Lal4g1505 1157 CDD B3_DNA 173 265 IPR003340 GO:0003677
Lal4g1505 1157 MobiDBLite consensus disorder prediction 693 717 - -
Lal4g1505 1157 ProSiteProfiles PB1 domain profile. 1032 1116 IPR000270 GO:0005515
Lal4g1505 1157 Pfam Auxin response factor 300 382 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lal4g1505 1157 Gene3D - 1027 1121 - -
Lal4g1505 1157 SUPERFAMILY DNA-binding pseudobarrel domain 164 303 IPR015300 -
Lal4g1505 1157 SUPERFAMILY CAD & PB1 domains 1047 1110 - -
Lal4g1505 1157 MobiDBLite consensus disorder prediction 756 776 - -
Lal4g1505 1157 Pfam B3 DNA binding domain 174 275 IPR003340 GO:0003677
Lal4g1505 1157 Gene3D - 337 408 - -
Lal4g1505 1157 ProSiteProfiles B3 DNA-binding domain profile. 174 276 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1505 Lal-Chr4 19217790 19228077 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1505 49 542 B3 DNA Binding Superfamily AT1G19220 80.769 0.0 816
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lal4g1505 AUX_IAA 9.2e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1505 K14486 - gmx:100804628 1563.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1505 4 19217790 19228077 Lal4g1505 4 19217790 19228077 ECH
Lal17g1480 17 16233046 16246817 Lal4g1505 4 19217790 19228077 LSH
Lal14g1637 14 16738705 16746000 Lal4g1505 4 19217790 19228077 PCT
Lal7g1042 7 16564862 16572735 Lal4g1505 4 19217790 19228077 PCT
Lal4g1505 4 19217790 19228077 Lal14g1637 14 16738705 16746000 PCT
Lal4g1505 4 19217790 19228077 Lal7g1042 7 16564862 16572735 PCT