Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1504 ATGGGAACGATGCAGAAGAAAAGTGATAAAGCAAATAAAGAAAAATCTGAAACCAAAAATAAGGAGAAGAAGAAGGGTCAAATCGTAAATAACAATAATGATGTTTTTTCTTCTTCCTCTTTCTCTAGCCTTGGTCTTCACCCTACTTTATGTGACCAACTTCATGAAAGGATGGGATTTGAAGCTCCAACGTTAGTCCAAGCTCAAGCAATTCCTGTTATTCTTTCAGGCCGTCACGCACTGGTTAATGCTGCCACTGGCACTGGGAAGACTGTTGTGTATTTGGCTCCAATTATTCATCACTTGCAGAGTTATGAGAACCGAATTCAGCGTTCTGATGGAACATTTGCGTTGGTTCTCGTACCGACGCGTGAGCTATGTTTGCAGGTTTATGAAATTCTCCTGAAGTTATTGCACCGGTTTCATTGGATTGTTCCGGGATACCTTATGGGTGGGGAAAATAGATCAAAGGAAAAAGCCAGGCTCCGCAAAGGCATATCAGTTCTCATAGCAACTCCTGGGCGCCTTTTAGATCATTTGAAGAATACAACTTCGTTCGTGTACACAAATTTGCGTTGGATAATTTTTGATGAAGCTGATCGGATTTTGGAATTAGGATTTGGAAAAGATATACAGGAAATATTAGTTCTTTTAGGTTCAACGAAAACAGAGAATGCAGTTCGAGACCACTCTAAAATTCAAAGACAGAACTTACTTTTATCTGCCACCTTAAATGAGAAAGTGAACCACCTTGCTAAAATTAGTCTAGACAATCCAGTGATGATTGGTCTCAATGATAAAAGAGTAGAACCAATCTCAACAATTGAAAGCCTTGATTCTTCAGGATCTGATGAAGACAATGAAGGCAAGATTTCCACTAAAATACCAACAATTGGAGATTATAAAGTCCCCACACAGTTGATTCAGAGATACGTGAAAGTGCCTTGTGGTTCTCGCCTTCCTGTACTACTTTCACTTTTAAAGCATCTTTTTGATAAAGAACCTTCACAAAAGGTTGTGTTATTCTTTTCAACATGTGATGCAGTAGACTTTCACTATTCACTGTTAAGTGAATTCCATTTTTCATCCTATCCACCAACTGAAGGAGGGACAAAGCAGGTGTTTCTTGGATGCAAAACTTTCCGGTTGCATGGTAATATGGAACAGTTGGACCGGAGATCGGCATTTCAGGCCTTTAAAACTGAGAAATCTGCTCTACTTTTGTCCACTGATGTTTCTGCTAGAGGCTTGGATTTTCCGAAGGTTCGATGTATTATACAATATGATTCTCCTGGGGAAGCTACTGAATACGTGCACAGAGTTGGTAGAACTGCTCGACTGGGTGAAAGAGGAGAATCATTCTTATTTCTACAACCAATTGAAATAGACTATTTACAGGATTTGGAGAAACATGGTGCCTCATTAACAGAGTATCCTCTCCTCAAAGTGCTGGATAGTTTCCCCCTGCATGGACAAAAGAACCTAAAGAGGTCTGATTTCATAGATGCACATCCATGGGTCCTCAGTCTCCAAAAGGCTCTTGAGTCCTTCATCATGTCCAAGCCTAAGATTGATGAACTAGCCAAGAAGGCATTTTGCTCTTGGGTCCGTGCATACACTGCCCATCGCGGTGAACTGAAAAGATTATTTATGATCAAGAAACTTCATTTAGGGCATGTAGCAAAAAGCTTTGCATTGAAGCAACAACCCTCCTTAGTTGGACAGTCATTCCAAAAGCAAACTAAGAAGAGAAAGAGATTTGACAAGAAAACCGGACTTCCGAAAAAGGTAAAATTTTCAAGCCGGACATAA 1812 0.4007 MGTMQKKSDKANKEKSETKNKEKKKGQIVNNNNDVFSSSSFSSLGLHPTLCDQLHERMGFEAPTLVQAQAIPVILSGRHALVNAATGTGKTVVYLAPIIHHLQSYENRIQRSDGTFALVLVPTRELCLQVYEILLKLLHRFHWIVPGYLMGGENRSKEKARLRKGISVLIATPGRLLDHLKNTTSFVYTNLRWIIFDEADRILELGFGKDIQEILVLLGSTKTENAVRDHSKIQRQNLLLSATLNEKVNHLAKISLDNPVMIGLNDKRVEPISTIESLDSSGSDEDNEGKISTKIPTIGDYKVPTQLIQRYVKVPCGSRLPVLLSLLKHLFDKEPSQKVVLFFSTCDAVDFHYSLLSEFHFSSYPPTEGGTKQVFLGCKTFRLHGNMEQLDRRSAFQAFKTEKSALLLSTDVSARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGERGESFLFLQPIEIDYLQDLEKHGASLTEYPLLKVLDSFPLHGQKNLKRSDFIDAHPWVLSLQKALESFIMSKPKIDELAKKAFCSWVRAYTAHRGELKRLFMIKKLHLGHVAKSFALKQQPSLVGQSFQKQTKKRKRFDKKTGLPKKVKFSSRT 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1504 603 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 464 IPR027417 -
Lal4g1504 603 SMART helicmild6 350 448 IPR001650 -
Lal4g1504 603 SMART DUF4217_3 509 574 IPR025313 -
Lal4g1504 603 MobiDBLite consensus disorder prediction 575 603 - -
Lal4g1504 603 Gene3D - 317 597 IPR027417 -
Lal4g1504 603 CDD SF2_C_DEAD 307 457 - -
Lal4g1504 603 Pfam DEAD/DEAH box helicase 65 250 IPR011545 GO:0003676|GO:0005524
Lal4g1504 603 MobiDBLite consensus disorder prediction 7 28 - -
Lal4g1504 603 MobiDBLite consensus disorder prediction 1 33 - -
Lal4g1504 603 Gene3D - 2 264 IPR027417 -
Lal4g1504 603 PANTHER ATP-DEPENDENT RNA HELICASE DDX31-RELATED 22 597 - -
Lal4g1504 603 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 262 IPR014001 -
Lal4g1504 603 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 262 IPR027417 -
Lal4g1504 603 CDD DEADc_DDX31 50 263 - -
Lal4g1504 603 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 326 495 IPR001650 -
Lal4g1504 603 SMART ultradead3 59 275 IPR014001 -
Lal4g1504 603 PANTHER RNA HELICASE 22 597 - -
Lal4g1504 603 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 195 203 IPR000629 -
Lal4g1504 603 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 44 311 IPR014013 GO:0005524
Lal4g1504 603 Pfam Helicase conserved C-terminal domain 327 448 IPR001650 -
Lal4g1504 603 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 39 68 IPR014014 GO:0003724
Lal4g1504 603 Pfam Domain of unknown function (DUF4217) 511 571 IPR025313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1504 Lal-Chr4 19197612 19205214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1504 39 480 Eukaryotic Initiation Factors Gene Family AT3G19760 25.901 3.79e-34 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1504 K14806 - gmx:100805157 952.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1504 4 19197612 19205214 Lal4g1504 4 19197612 19205214 ECH