Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1491 ATGCATGCAGTGGTACTTGGAGAAGGGTTCTTAGGAAAATCAATGGGATTTAGGAACACTGCAGGCCCAGAAAAGCATCAAGCAGTGGCTGCTAGAGTACAAGCTGATCGTGCAATATTTGTGAATTGTCGTTTTGAAGGATACCAAGACACTTTATATGCACAAACTCATAGACAATTCTACCGTAGTTGTGTCATTGCAGGCACAATAGATTTCATATTTGGTGATGCAGCTGCTATATTCCAAAACTGCATCATGCAACTTAGAAAACCAATGGAAAATCAACAAAACATTGTCACTGCTCAAGGTAGATACCAACATCAAGAAACAACTGGTTTTGTTCTACAAAAGTGTGAGATTAAACCTGATGAGAAACTAGTTCCAGAGAAAGATAAAATCAAAAGCTACCTTGGTAGACCATGGAAGGAATATTCAAGAACCATTATCATGGAATCAGAAATAGGAGACATAATTCACCCAGATGGATGGTTACCTTGGGCAGGAGATTTTGCACTAAAGACATTGTATTATGCTGAGTTCAACAACACAGGACTTGGTGCCAAAACCAATGCTAGGGTCAATTGGGTTGGTCACAAAGTTATTAACAAAGAAGAAGCTGCAAAATTTGCAGTTGGACCTTTCTTGAATGGAACATGGATTACTGGTAAAGGTGTACCTGCTCAAATGGGTTTGTATAATTAA 702 0.3875 MHAVVLGEGFLGKSMGFRNTAGPEKHQAVAARVQADRAIFVNCRFEGYQDTLYAQTHRQFYRSCVIAGTIDFIFGDAAAIFQNCIMQLRKPMENQQNIVTAQGRYQHQETTGFVLQKCEIKPDEKLVPEKDKIKSYLGRPWKEYSRTIIMESEIGDIIHPDGWLPWAGDFALKTLYYAEFNNTGLGAKTNARVNWVGHKVINKEEAAKFAVGPFLNGTWITGKGVPAQMGLYN 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1491 233 ProSitePatterns Pectinesterase signature 2. 66 75 IPR033131 -
Lal4g1491 233 Pfam Pectinesterase 5 217 IPR000070 GO:0030599|GO:0042545
Lal4g1491 233 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 45-RELATED 4 231 - -
Lal4g1491 233 PANTHER PECTINESTERASE 4 231 - -
Lal4g1491 233 Gene3D - 2 231 IPR012334 -
Lal4g1491 233 SUPERFAMILY Pectin lyase-like 4 221 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1491 Lal-Chr4 19062626 19063327 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1491 4 233 Carbohydrate Esterase AT2G26450 65.801 1.85e-110 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1491 - - gmx:100784679 370.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1467 17 16038618 16039696 Lal4g1491 4 19062626 19063327 LSH
Lal14g1622 14 16637449 16639513 Lal4g1491 4 19062626 19063327 PCT
Lal7g1027 7 16426240 16428238 Lal4g1491 4 19062626 19063327 PCT
Lal4g1491 4 19062626 19063327 Lal14g1622 14 16637449 16639513 PCT
Lal4g1491 4 19062626 19063327 Lal7g1027 7 16426240 16428238 PCT