Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1490 ATGGCATTTCAAGATTTTGCAATCTTATCTGAAAGGAGAAGAAATGAAAGGAAAGAAAAAGTGAGAAAAAGGGTTATCCTTGGTGTAGTTTCATTCATTCTCCTTTTGTGTATAATAGGTGCTGCAACATTTGTTCTTGTCAACAAAACTAGCTCTGAAAAAAGTGCTAACAAAAAAGATCCTTCAACTTCAACCAATGCAAAAGTAGAAAATTATTTAAAGACAGTAAAAACAATTTGTAGTTCAGTTGAATACAAGACTAAATGTGAAGGTCCCCTTAGCAAGGAAATCGAAAAGAACCCGAAAATCGCGCAACCGAAGGAACTTCTCAAGGCATCCATGAAACTTGCTGAGCAAGAAATCAACAAGGCCTTTAACAAAACAAGTTCAATGAAGTTTGAATCCGAAATCGAAAAAGGAGCATATGAAGATTGTAAACAACTTATAGATGATGCTAGGGAAGAGTTAGGATTTTCGATATCCGAAATTAGCAAAAATGATTTGAAGAAACTTTCAACAAGAACTCCTGAATTGAACAATTGGCTTAGTGCAGTTATATCATACCACCAAACATGCATTGATGGATTTCCTGATGGAGAGTTAAAGAGTGGACTTAAAAAACTTTTCCAAGATCCACAAGAATTTGTTAGCAATTCCCTCTCCATTCTCTCAAACTTGTCTTCTTTCCTTTCTGCGCTCCAACCCGATGCGACTCGTCACTTGCTATCGGAGAAAACCGATCGCTTGCCTTCTTGGATTCGCGGTGACGATAGAAGGATGTTGAAAGCATCAGATGACAAGCCCACACCTAATGTCACTGTGGCAAAAGATGGCTCTGGAAACTTTAAAACCATATCTCAGGCATTAGCAGCCATGCCACAAACATATACAGGACGCTATGTGGTTTATGTGAAAGAAGGAATATATGAGGAGACAGTGACAGTGACAAAGAAAATGGTAAATCTAACCATTTATGGTGATGGATCACCAAAGAGTATCATCACTGGAAGCAAAAATTTTGTAGATGGAGTCAGGACTTTCCAAACTGCAACATTTGGTAAGTACTTGTGTTAG 1074 0.378 MAFQDFAILSERRRNERKEKVRKRVILGVVSFILLLCIIGAATFVLVNKTSSEKSANKKDPSTSTNAKVENYLKTVKTICSSVEYKTKCEGPLSKEIEKNPKIAQPKELLKASMKLAEQEINKAFNKTSSMKFESEIEKGAYEDCKQLIDDAREELGFSISEISKNDLKKLSTRTPELNNWLSAVISYHQTCIDGFPDGELKSGLKKLFQDPQEFVSNSLSILSNLSSFLSALQPDATRHLLSEKTDRLPSWIRGDDRRMLKASDDKPTPNVTVAKDGSGNFKTISQALAAMPQTYTGRYVVYVKEGIYEETVTVTKKMVNLTIYGDGSPKSIITGSKNFVDGVRTFQTATFGKYLC 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1490 357 Pfam Pectinesterase 271 353 IPR000070 GO:0030599|GO:0042545
Lal4g1490 357 PANTHER PECTINESTERASE 14 352 - -
Lal4g1490 357 PANTHER PECTINESTERASE 14 352 - -
Lal4g1490 357 SMART PMEI_2 71 222 IPR006501 GO:0004857
Lal4g1490 357 CDD PMEI-like_3 78 216 - -
Lal4g1490 357 SUPERFAMILY Pectin lyase-like 269 352 IPR011050 -
Lal4g1490 357 TIGRFAM PME_inhib: pectinesterase inhibitor domain 66 226 IPR006501 GO:0004857
Lal4g1490 357 Gene3D Invertase/pectin methylesterase inhibitor family protein 73 228 IPR035513 -
Lal4g1490 357 Gene3D - 269 355 IPR012334 -
Lal4g1490 357 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 75 227 IPR035513 -
Lal4g1490 357 Pfam Plant invertase/pectin methylesterase inhibitor 75 222 IPR006501 GO:0004857
Lal4g1490 357 Coils Coil 107 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1490 Lal-Chr4 19060552 19061830 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1490 1 352 Carbohydrate Esterase AT2G26450 40.415 1.81e-87 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1490 - - gmx:100784679 402.905