Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1489 ATGGCTTCAACATCTCATGAACTCTTCTTCTTTCTCCTTACAATACTCTTCTCACATACTTTGGCTACAAACTCCTCCAATGCTACCACAACATTTCATGCAAACCTCTCATCCTTAAGATCCATTTGCAAAACCACACCATACCCAGAACTTTGCTTCAACTCATTAAAACTCTCCATCTCAATAAACATAAGTCCAAACATCATCACTTTCCTTCTTCATTCTCTCCAAGTAGCAATATCTGAAGCCACAAAGCTAACAAATCTGTTACAAAATGCTGCTGTGAACTCAAACATCATAGAGAAACAAAAAGGAACAGTCCAAGATTGTAATGAACTTCACCAATCTACTTTAACTTCTTTGAAAAGATCATTGTCATGGATTCAATCTAAGGACTCAAAGAACATAGTTAATGCAAGAGCATATCTTAGTGCAGCAGTTACCAACAAGAACACATGTTTAGAAGGTTTAGATTCAGCTTCTGGTACCATGAAACAAGTTGTAGTGAATTCTGTGATCAACACATACAATCATGTGAGTAACTCTCTTTCAATGCTTTCTAAGTCTAGGGTTAAGGGTCCTAAAGGGTTGAAAAACATGCCTTTGATGAAGAGTGCTACTACTACTACTACTACTACTAGTCCAACATGGTTTTCAAGAAAAGATCTTAGCTTTGTGATTGGTGGTGGAGATGGTGGTGAAGAATATGTTCCAAATGATGTGATTGTTGTGGCTTCTGATGGAACTGGAAACTTTAGTACTGTTACTGATGCTATCAACTTTGCTCCAAATAACAGCATTGATAGAACAGTGGTATATGTTAAAGAAGGGATTTATGAAGAAAATGTTGAAATACCAATTTATAAGACTAACATTGTTCTTCTTGGTGAAGGAAGTGATGTCACAATCATAACTGGTAATAGAAGTGTTATTGATGGATGGACCACTTTCAGATCTGCAACTCTAGGTGTTTCTGGTGAGGGATTTCTAGCACGAGATATAGCATTTGAGAACAGTGCAGGAGCAGAGAAGCATCAAGCATCAGCATTAAGAGTAAATGCAGATTTGAGTGCATTTTACAGATGTGCCATTTATGGTTACCAAGACACTCTTTATGTCCATTCCTTTAGACAATTCTATAGAGAATGTGACATTTATGGTACCATAGATTTCATATTTGGTAATGCAGCTGTAGTATTACAAGCATGTAACATTATATCCAAAACGCCAATGCCAGGCCAATTCACTGTAATTACAGCACAATCAAGAGACTCGCCCGATGAAGACACCGGAATCTCGATCCAAAATTGCTCAATTCTCGCGACAACAGATCTTTATTCGAACTCTAGTAGCTTCAAGAGCTATCTTGGTAGGCCATGGAAGGTATATTCTAGAGTAGTATACCTTGAATCTTACATTGATGACTTTATTGACCAAATGGGTTGGACAAAATGGTCTAAAAATAATGATCAAGAAGGCTTAGATACTTTATATTATGGAGAGTATATGAATAATGGACCTGGTTCTAAGACAGAAAATCGTGTAGCATGGAATGGATATCATATAATGGATTACAATGATGCTTATAATTTCACTGTTTCAGAGTTTATTATTGGTGATGATTGGCTTCAATCTACATCTTTCCCTTATGATGATGGGATTTGA 1665 0.3664 MASTSHELFFFLLTILFSHTLATNSSNATTTFHANLSSLRSICKTTPYPELCFNSLKLSISINISPNIITFLLHSLQVAISEATKLTNLLQNAAVNSNIIEKQKGTVQDCNELHQSTLTSLKRSLSWIQSKDSKNIVNARAYLSAAVTNKNTCLEGLDSASGTMKQVVVNSVINTYNHVSNSLSMLSKSRVKGPKGLKNMPLMKSATTTTTTTSPTWFSRKDLSFVIGGGDGGEEYVPNDVIVVASDGTGNFSTVTDAINFAPNNSIDRTVVYVKEGIYEENVEIPIYKTNIVLLGEGSDVTIITGNRSVIDGWTTFRSATLGVSGEGFLARDIAFENSAGAEKHQASALRVNADLSAFYRCAIYGYQDTLYVHSFRQFYRECDIYGTIDFIFGNAAVVLQACNIISKTPMPGQFTVITAQSRDSPDEDTGISIQNCSILATTDLYSNSSSFKSYLGRPWKVYSRVVYLESYIDDFIDQMGWTKWSKNNDQEGLDTLYYGEYMNNGPGSKTENRVAWNGYHIMDYNDAYNFTVSEFIIGDDWLQSTSFPYDDGI 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1489 554 Gene3D - 238 554 IPR012334 -
Lal4g1489 554 ProSitePatterns Pectinesterase signature 2. 385 394 IPR033131 -
Lal4g1489 554 Pfam Plant invertase/pectin methylesterase inhibitor 38 185 IPR006501 GO:0004857
Lal4g1489 554 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 189 IPR035513 -
Lal4g1489 554 PANTHER PECTINESTERASE 8 553 - -
Lal4g1489 554 SMART PMEI_2 34 185 IPR006501 GO:0004857
Lal4g1489 554 Pfam Pectinesterase 242 540 IPR000070 GO:0030599|GO:0042545
Lal4g1489 554 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 186 IPR006501 GO:0004857
Lal4g1489 554 CDD PMEI-like_3 41 188 - -
Lal4g1489 554 PANTHER PECTINESTERASE 8 553 - -
Lal4g1489 554 SUPERFAMILY Pectin lyase-like 237 551 IPR011050 -
Lal4g1489 554 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 187 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1489 Lal-Chr4 19054917 19057796 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1489 37 554 Carbohydrate Esterase AT2G26440 65.267 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1489 - - gmx:100776969 811.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1489 4 19054917 19057796 Lal4g1489 4 19054917 19057796 ECH
Lal19g1176 19 15217761 15223903 Lal4g1489 4 19054917 19057796 PCT
Lal4g1489 4 19054917 19057796 Lal19g1176 19 15217761 15223903 PCT