Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1488 ATGGATACATGCATGAATGGAATTGGAGGAACTAATGACTTGTTAATGGGTCAAATATTAACTAACATAAACAATGTAACCACATTGGTCAACAACCTTCTCTCTAAGGTGAACCCTAGCTTGGCTCACTTATCTACCAAACATGACCAATTCCCTTCATGGGTTGAACAAGGTGATCATAGTTTATTACAAATAGGTAACATTACTGTTCATGTTGTAGTAGCCGCTGATGGGTCAGGGAACTATACTAAAGTCATGGATGCAGTGAATGTAGCACCTGAATATAGCATGAAACGTTTTGTGGTGTTAGTAAGAAAAGGGAAATACACTGAGAATGTTGTTATCAGTAAAAAGAAGTGGAACCTTATGATGATTGGAGAGGGTATGGATGCTACTATTATCACTAGTAACTCGTTTAAAACTGATAATGTGTCCACATATGGCACAGCTACCTTTGCTGTGGATGGAAAAGGGTTCATAGGAAAAGACATTACATTTAGTAACACAGCAGGACCAGAAAAGAACCAATCAGTGGCACTAAGATCAGACTCTGACCTCTCAGTTTTCTACAGATGTGGAATATTTGGTTACCAAGACACCCTTTATGCCCACACCATGCGCCAATTCTATAGAGAATGCACTATCACTGGCACAGTTGATTTCATATTTGGTAATGCCACTGCAGTGTTCCAAAACTGTCAAATACTTGCCAAAAAAGGCAAACCAAATCAAACGAACACAATCACAGCACAAGGTGCGAGATTCCCAAATCAATCATCATGTTTCTCATTCCAATCATGCAATATCTCTGCAGATAAGGACCTTATACCCTTTCTAAATTCCACTGAAACATACCTTGGAAGACCATGGCGACCATATTCTAAAACAGTTTTCATGCAATCCTACTTTAGTGACGTGGTGAATCCAAAAGGATGGCTAGAGTGGAATGGGACGAATAATTTGGACACATTGTACTATGCTGAGTACAATAATACTGGACCAGGAGCTGCATTAGACAATAGAGTGCAATGGTCTGGGTATCATGTTTTGAAAGATCCTAGCCAGGCTAGTATGTACACAGTTGCACAATTGATTCATGGGGATCTATGGTTACCTTTAACAGGTGTAAATTTCACTTCTGGATTTGTGGTTTAA 1155 0.3922 MDTCMNGIGGTNDLLMGQILTNINNVTTLVNNLLSKVNPSLAHLSTKHDQFPSWVEQGDHSLLQIGNITVHVVVAADGSGNYTKVMDAVNVAPEYSMKRFVVLVRKGKYTENVVISKKKWNLMMIGEGMDATIITSNSFKTDNVSTYGTATFAVDGKGFIGKDITFSNTAGPEKNQSVALRSDSDLSVFYRCGIFGYQDTLYAHTMRQFYRECTITGTVDFIFGNATAVFQNCQILAKKGKPNQTNTITAQGARFPNQSSCFSFQSCNISADKDLIPFLNSTETYLGRPWRPYSKTVFMQSYFSDVVNPKGWLEWNGTNNLDTLYYAEYNNTGPGAALDNRVQWSGYHVLKDPSQASMYTVAQLIHGDLWLPLTGVNFTSGFVV 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1488 384 SUPERFAMILY Pectin lyase-like 70 381 IPR011050 -
Lal4g1488 384 Pfam Pectinesterase 71 368 IPR000070 GO:0030599|GO:0042545
Lal4g1488 384 ProSitePatterns Pectinesterase signature 2. 215 224 IPR033131 -
Lal4g1488 384 Gene3D - 65 382 IPR012334 -
Lal4g1488 384 PANTHER PECTINESTERASE 42 382 - -
Lal4g1488 384 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 42 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1488 Lal-Chr4 19035593 19037292 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1488 2 383 Carbohydrate Esterase AT3G43270 57.828 3.22e-170 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1488 K01051 - gmx:100798620 518.464