Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1487 ATGTCCACATTCTTCTCCTACTTCTTATTGTTGGTGGTTTTTCTTGGCCAATGCACCACCCCATTTGGTGTTTATGGTGCTCCTCCTTCTGGTTATGTTGGAGTAGATAGTATAATGGTTTCTCCTTCAGATTTTGTTGATTCATTGGGAATTGTTGTTAATGTTTTGCAGGGTGTAACTACTTCTCTCTTAAATGCCACTCATATCAATAACCATGCTATCTCTGACTGCATAGAATTAATTGGCTTAACAACAGATTTTCTAGACTGGTCTATATCAGCCACTAAGAGTCCCAAAGGCACAACTAACACTACTACTGGAAACTTGAGCTCTGATTTAAGGACATGGCTAAGTGCTGTACTTACAAATATGGATACATGCATGAATGAAATTGGAGGAACCGATGACTTGTTAATGAGTCAAATATTAACTAACATAAACAATGTAACCTCATTGGTCAACAACCTTCTCTCTAAGGTGAACCCTAGCTTGGGTCACTTATCTACCAAACATGACAAATTCCCTTCATGGGTTGAACAAAGTGATCGTAATCTATTACAAATAAGTAACATTACTGTGGATGTTGTAGTAGCTGCTGATGGGTCAGGGAATTATACTAAAGTCATGGATGCAGTGAATGTAGCACCTGAATATAGCATGAAACGTTTTGTGGTGTTAGTAAGAAAAGGGAATTACACTGAGAATGTTGTTATAAGTAAAAGGAAATGGAACCTTATGATGATCGGAGAGGGTATGGATGCTACTATTATCACTGGTGAATCATTTAAAACTCAAAACGTGTCCACATATGGCACAGCTACCTTTGCTGTGAATGGAAGGGGGTTCATAGGTAAAGATATTACATTCAGTAACACAGCAGGACCAGAGAAGAACCAATCAGTAGCACTAAGATCAGACTCTGACCTCTCGGTTTTCTACAGATGTGGAATATTTGGTTACCAAGACACCCTTTATGCCCACACCATGCGCCAATTCTATAGAGAATGCACTATCACTGGCACAGTTGATTTCATATTTGGCAATGCCACTGCAGTGTTCCAAAACTGTCAAATACTTGCCAGAAAAGGCAACCCAAATCAAAAGAACACAATCACAGCACAGGGTGCAAGATACCCAAATCAAACATCATGTTTCTCAATCCAATCTTGCAACATCTCTGCAGATAATGACCTTATACCCTTTCTAAATTCCACTGAAACATACCTTGGAAGACCATGGCAACCATATTCTAAAACAGTTTTCATGCAATCCTACTTAGGTGATTTGGTGAATCCAAAAGGGTGGCTAGAGTGGAATGGGACCCAATATTTGGACACATTGTCCTATGTTGAGTACAATAATACTGGACCAGGAGCTGCATTAGACAATAGAGTGCAATGGCCTGGGTATCATGTTTTGAAAGATCCTAGCCAGGCTAGTATGTACACAGTTGCACAATTGATTCATGGGGATCTATGGTTACCTTTAACAGGTGTAAATTTCACTTCTGGATTTGTGGTTTCAAACAATGCCAAAGTATAA 1542 0.3923 MSTFFSYFLLLVVFLGQCTTPFGVYGAPPSGYVGVDSIMVSPSDFVDSLGIVVNVLQGVTTSLLNATHINNHAISDCIELIGLTTDFLDWSISATKSPKGTTNTTTGNLSSDLRTWLSAVLTNMDTCMNEIGGTDDLLMSQILTNINNVTSLVNNLLSKVNPSLGHLSTKHDKFPSWVEQSDRNLLQISNITVDVVVAADGSGNYTKVMDAVNVAPEYSMKRFVVLVRKGNYTENVVISKRKWNLMMIGEGMDATIITGESFKTQNVSTYGTATFAVNGRGFIGKDITFSNTAGPEKNQSVALRSDSDLSVFYRCGIFGYQDTLYAHTMRQFYRECTITGTVDFIFGNATAVFQNCQILARKGNPNQKNTITAQGARYPNQTSCFSIQSCNISADNDLIPFLNSTETYLGRPWQPYSKTVFMQSYLGDLVNPKGWLEWNGTQYLDTLSYVEYNNTGPGAALDNRVQWPGYHVLKDPSQASMYTVAQLIHGDLWLPLTGVNFTSGFVVSNNAKV 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1487 513 Pfam Pectinesterase 194 491 IPR000070 GO:0030599|GO:0042545
Lal4g1487 513 Pfam Plant invertase/pectin methylesterase inhibitor 70 157 IPR006501 GO:0004857
Lal4g1487 513 SMART PMEI_2 41 159 IPR006501 GO:0004857
Lal4g1487 513 ProSitePatterns Pectinesterase signature 2. 338 347 IPR033131 -
Lal4g1487 513 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 158 IPR035513 -
Lal4g1487 513 SUPERFAMILY Pectin lyase-like 192 504 IPR011050 -
Lal4g1487 513 PANTHER PECTINESTERASE 36 505 - -
Lal4g1487 513 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 36 505 - -
Lal4g1487 513 Gene3D - 188 505 IPR012334 -
Lal4g1487 513 CDD PMEI-like_4 40 157 - -
Lal4g1487 513 Gene3D Invertase/pectin methylesterase inhibitor family protein 46 162 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1487 Lal-Chr4 19008255 19011477 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1487 6 506 Carbohydrate Esterase AT3G43270 50.672 0.0 539
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1487 K01051 - gmx:100798620 592.423