Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1485 ATGTCCACATTCTTCTACTACTTCTTGTTGATGGTTGTTTTTCTTGGCCAATGCACCACCCCATTTGGTGTTTTTGGTGCTCCTCCTACTGGTTATGTTGGAGTAGAGAGTCTAATGGTTTCTCCTTCTGATTTTGTTGATTCATTGGAAACTGTTGTCAATGTTTTGCAGGGTGTAACTACTTCTCTCTTAAATGCCACTAATAGCAATAACCATGCTATCTCTGACTGCATGGAATTACTTGGCTTAACAACAGATTTGCTAGAATGGTCTATATCAGCCACTAAGAGTCCCAATGGCAAGACTAACACTACTACCGGAAACTTGAGCTCTGATTTAAGGACATGGCTAAGTGCTATACTTACAAATATGGACACATGCATGAATGAAATTGGAGGAACCAATGACTTGTTAATAGGTCAAATATTAACTAACTTAAACAATGTAACCACATTGGTCAACAACCTTCTCTCTAAGGTGAACCCTAGTTTGGGTCACTTATCCGACAAACATGACCAATTCCCTTCATGGGTTGAACAAGGTGACCATAATCTATTAAAAATAGGTAATATTATTGTGGATGTTGTAGTAGCTGTCGATGGGTCGGGAAATTATACTAAAGTCATGGATGCAGTGAATGTAGCACCTGAGTATAACATGAAACGTTTTGTGGTGTTAGTAAGAAAAGGGAATTACAATGAGAATGTTGTTATAAGTAAAACGAAGTGGAACCTTATGATGATTGGAGAGGGCATGGATACTACTATTATAAGTGGTAACTCGTTTAAAACTCAAAATGTGTCCACATATGGCACAGCTACCTTTGCTGTGAATGGAAGAGGGTTCATAGGAAAAGACATTACATTTCGTAACACAGCAGGACCAGAAAAGAACCAATCAGTAGCACTAAGATCAGACTCTGACCTCTCAGTTTTCTATAGATGTGGAATATTTGGTTACCAAGACACCCTTTATGCCCACACCATGCGCCAATTCTATAGAGAATGCACTATAAGTGGTACAATTGATTTCATATTTGGTAATGCCACTGCAGTGTTCCAAAACTGCCAAATACTTGCCAAAAAAGGCAAACCAAATCAAAAGAACACAATTACAGCACAAGGAGCAAGATACCCAAATCAAACATCATGTTTCTCAATTCAATCCTGCAATATCTCTGCAGATAATGACCTTATACCCTTTCTAAATTCCACTGAAACATACCTTGGAAGACCATGGCGACCATATTCTAAAACAATTTTTATGCAATCCTACTTAAGTGTTGTGGTGAATCCAAAAGGGTGGCTAGCGTGGAATGGGACCAATAATTTGGACACATTGTACTATGCTGAGTACAATAATACTGGACCAGGAGCTGCATTAGAGAATAGAGTGCAATGGCCTGGGTACCATGTTTTGAAAGATCCTAGTCAGGCTAGTATATACACTGTTGCACAATTGATTCATGGGGATCTATGGTTACCTTTAACAGGTGTAAATTTCACTTCTGGATTTGTGGTTTAA 1524 0.3858 MSTFFYYFLLMVVFLGQCTTPFGVFGAPPTGYVGVESLMVSPSDFVDSLETVVNVLQGVTTSLLNATNSNNHAISDCMELLGLTTDLLEWSISATKSPNGKTNTTTGNLSSDLRTWLSAILTNMDTCMNEIGGTNDLLIGQILTNLNNVTTLVNNLLSKVNPSLGHLSDKHDQFPSWVEQGDHNLLKIGNIIVDVVVAVDGSGNYTKVMDAVNVAPEYNMKRFVVLVRKGNYNENVVISKTKWNLMMIGEGMDTTIISGNSFKTQNVSTYGTATFAVNGRGFIGKDITFRNTAGPEKNQSVALRSDSDLSVFYRCGIFGYQDTLYAHTMRQFYRECTISGTIDFIFGNATAVFQNCQILAKKGKPNQKNTITAQGARYPNQTSCFSIQSCNISADNDLIPFLNSTETYLGRPWRPYSKTIFMQSYLSVVVNPKGWLAWNGTNNLDTLYYAEYNNTGPGAALENRVQWPGYHVLKDPSQASIYTVAQLIHGDLWLPLTGVNFTSGFVV 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1485 507 Gene3D - 189 505 IPR012334 -
Lal4g1485 507 Pfam Plant invertase/pectin methylesterase inhibitor 62 157 IPR006501 GO:0004857
Lal4g1485 507 SMART PMEI_2 28 159 IPR006501 GO:0004857
Lal4g1485 507 PANTHER PECTINESTERASE 39 505 - -
Lal4g1485 507 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 39 505 - -
Lal4g1485 507 SUPERFAMILY Pectin lyase-like 194 504 IPR011050 -
Lal4g1485 507 ProSitePatterns Pectinesterase signature 2. 338 347 IPR033131 -
Lal4g1485 507 Gene3D Invertase/pectin methylesterase inhibitor family protein 44 162 IPR035513 -
Lal4g1485 507 CDD PMEI-like_4 36 157 - -
Lal4g1485 507 Pfam Pectinesterase 194 491 IPR000070 GO:0030599|GO:0042545
Lal4g1485 507 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 44 158 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1485 Lal-Chr4 18968679 18971798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1485 2 506 Carbohydrate Esterase AT3G43270 50.763 0.0 541
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1485 K01051 - gmx:100798620 603.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1463 17 16013949 16016973 Lal4g1485 4 18968679 18971798 LSH
Lal7g1026 7 16415355 16421033 Lal4g1485 4 18968679 18971798 PCT
Lal4g1485 4 18968679 18971798 Lal7g1026 7 16415355 16421033 PCT